SMTL ID : 7lb1.1

Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to ZS1-585

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: P.34, F.35, V.39, Y.47, S.86, Y.89, N.90, L.96 Ligands: EDO.3 Ligand excluded by PLIP EDO.2: 7 residues within 4Å: Chain A: I.23, N.24, R.27, H.36, L.57, Q.58, R.61 Ligand excluded by PLIP EDO.3: 7 residues within 4Å: Chain A: V.39, V.44, Y.47, Y.89, N.90, L.96 Ligands: EDO.1 Ligand excluded by PLIP EDO.4: 7 residues within 4Å: Chain A: T.52, R.53, M.55, H.78, L.81 Ligands: EDO.14, EDO.17 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: L.204, A.207, K.211 Ligand excluded by PLIP EDO.6: 8 residues within 4Å: Chain A: P.70, S.71, E.73, E.74, N.126, L.129, K.189, H.190 Ligand excluded by PLIP EDO.7: 2 residues within 4Å: Chain A: E.196, D.200 Ligand excluded by PLIP EDO.8: 9 residues within 4Å: Chain A: M.150, A.151, V.152, P.153, D.154, S.155, W.156, H.159 Ligands: EDO.19 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain A: V.83, A.87, P.92, T.97, Q.101 Ligand excluded by PLIP EDO.11: 8 residues within 4Å: Chain A: R.27, D.28, L.29, P.30, N.31, T.32, Y.33, H.36 Ligand excluded by PLIP EDO.12: 7 residues within 4Å: Chain A: P.34, T.37, P.38, V.39, N.40, V.43, V.44 Ligand excluded by PLIP EDO.13: 2 residues within 4Å: Chain A: S.102, D.105 Ligand excluded by PLIP EDO.14: 8 residues within 4Å: Chain A: T.52, R.53, Y.171, I.174, V.175, N.176, P.177 Ligands: EDO.4 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain A: V.167, Y.212, N.213, Y.219 Ligands: XWV.20 Ligand excluded by PLIP EDO.16: 7 residues within 4Å: Chain A: T.52, R.53, L.81, P.161, V.162, N.163, Y.171 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain A: P.54, M.55, T.59, N.63, H.78 Ligands: EDO.4 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain A: N.213, G.214, P.215, E.216, S.217 Ligand excluded by PLIP EDO.19: 4 residues within 4Å: Chain A: W.156, H.159, H.160 Ligands: EDO.8 Ligand excluded by PLIP

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.10: 4 residues within 4Å: Chain A: S.197, D.200, D.201, L.204 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.200, A:D.200 Water bridges: A:K.191, A:K.191, A:K.191

1 x XWV: 5-{4-[(3R)-3-methylmorpholin-4-yl]-6-[1-(S-methylsulfonimidoyl)cyclopropyl]pyrimidin-2-yl}isoquinoline(Non-covalent)

XWV.20: 14 residues within 4Å: Chain A: W.156, P.157, F.158, H.160, P.161, V.162, N.163, F.166, V.167, Y.170, Y.212, N.213, Y.219 Ligands: EDO.15 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.156, A:V.162, A:F.166, A:Y.212 Hydrogen bonds: A:N.163, A:N.213 Water bridges: A:P.161, A:V.162, A:Y.170, A:Y.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, M.R. et al., Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to ZS1-585. To Be Published

Release Date

2021-07-14

Peptides

Transcription initiation factor TFIID subunit 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transcription initiation factor TFIID subunit 1

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