SMTL ID : 7t2i.1

Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to ZS1-588

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 4 residues within 4Å: Chain A: P.34, F.35, V.39, N.90 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.90

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: M.150, V.152, D.154, S.155, W.156, H.159 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.155, A:W.156 Water bridges: A:D.154, A:D.154 EDO.3: 2 residues within 4Å: Chain A: Q.218, Y.219 No protein-ligand interaction detected (PLIP) EDO.4: 5 residues within 4Å: Chain A: P.34, T.37, P.38, V.39, N.40 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.34, A:T.37, A:N.40 Water bridges: A:T.37

1 x E9F: 4-(6-{1-[(R)-S-methanesulfonimidoyl]cyclopropyl}-2-[(3R)-3-methylmorpholin-4-yl]pyrimidin-4-yl)-1H-pyrrolo[2,3-b]pyridine(Non-covalent)

E9F.5: 11 residues within 4Å: Chain A: W.156, P.157, F.158, H.160, P.161, V.162, N.163, F.166, Y.212, N.213, Y.219 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.156, A:P.157, A:V.162 Hydrogen bonds: A:N.163, A:N.213, A:N.213 pi-Stacking: A:W.156, A:Y.219, A:Y.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, M.R. et al., Crystal structure of the tandem bromodomain (BD1, BD2) of human TAF1 bound to ZS1-588. To Be Published

Release Date

2022-01-19

Peptides

Transcription initiation factor TFIID subunit 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transcription initiation factor TFIID subunit 1

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