SMTL ID : 7m2k.2 (3 other biounits)

CDC34A-Ubiquitin-2ab inhibitor complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GZM: 4-[(3',5'-dichloro[1,1'-biphenyl]-4-yl)methyl]-N-ethyl-1-(methoxyacetyl)piperidine-4-carboxamide(Non-covalent)

GZM.1: 15 residues within 4Å: Chain A: I.41, P.44, N.46, T.47, Y.48, Y.49, F.54, I.124, L.127, N.128, Y.144, W.147, Y.157 Chain B: G.51, K.52 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:P.44, A:T.47, A:Y.49, A:Y.49, A:Y.144, A:W.147, A:Y.157 Hydrogen bonds: A:Y.48, B:K.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

St-Cyr, D. et al., Identification and optimization of molecular glue compounds that inhibit a noncovalent E2 enzyme-ubiquitin complex. Sci Adv (2021)

Release Date

2021-11-03

Peptides

Ubiquitin-conjugating enzyme E2 R1: A
Ubiquitin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Ubiquitin-conjugating enzyme E2 R1

Ubiquitin

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