SMTL ID : 7zj3.1 (1 other biounit)

Structure of TRIM2 RING domain in complex with UBE2D1~Ub conjugate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.25, C.28, C.45, C.48 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.25, A:C.28, A:C.45, A:C.48 ZN.2: 4 residues within 4Å: Chain A: C.40, H.42, C.62, C.65 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.40, A:H.42, A:C.62, A:C.65 ZN.3: 4 residues within 4Å: Chain D: C.25, C.28, C.45, C.48 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.25, D:C.28, D:C.45, D:C.48 ZN.4: 4 residues within 4Å: Chain D: C.40, H.42, C.62, C.65 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.40, D:H.42, D:C.62, D:C.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Esposito, D. et al., Divergent self-association properties of paralogous proteins TRIM2 and TRIM3 regulate their E3 ligase activity. Nat Commun (2022)

Release Date

2022-11-30

Peptides

Tripartite motif-containing protein 2: AD
Ubiquitin-conjugating enzyme E2 D1: BE
Polyubiquitin-C: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

D
J

B
E

E
K

C
F

F
L

Tripartite motif-containing protein 2

Ubiquitin-conjugating enzyme E2 D1

Polyubiquitin-C

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