- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-2-2-1-1-1-1-1-1-1-1-1-1-1-6-6-1-2-1-1-mer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)
- 6 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.4: 19 residues within 4Å:- Chain Q: G.10, Q.11, C.12, Q.15, I.16, E.69, S.138, G.141, G.142, T.143, G.144, D.177, E.181, N.204, Y.222, L.225, N.226
- Chain S: L.248, E.254
12 PLIP interactions:12 interactions with chain Q- Hydrogen bonds: Q:Q.11, Q:C.12, Q:S.138, Q:G.141, Q:T.143, Q:G.144, Q:D.177, Q:E.181, Q:N.204, Q:N.204, Q:N.226, Q:N.226
GDP.9: 19 residues within 4Å:- Chain U: G.10, Q.11, C.12, Q.15, I.16, E.69, S.138, G.141, G.142, T.143, G.144, D.177, E.181, N.204, Y.222, L.225, N.226
- Chain W: L.248, E.254
12 PLIP interactions:12 interactions with chain U- Hydrogen bonds: U:Q.11, U:C.12, U:S.138, U:G.141, U:T.143, U:G.144, U:D.177, U:E.181, U:N.204, U:N.204, U:N.226, U:N.226
GDP.12: 17 residues within 4Å:- Chain Y: G.10, Q.11, C.12, Q.15, I.16, E.69, S.138, G.141, G.142, T.143, G.144, D.177, E.181, N.204, Y.222, L.225, N.226
12 PLIP interactions:12 interactions with chain Y- Hydrogen bonds: Y:Q.11, Y:C.12, Y:S.138, Y:G.141, Y:T.143, Y:G.144, Y:D.177, Y:E.181, Y:N.204, Y:N.204, Y:N.226, Y:N.226
GDP.15: 19 residues within 4Å:- Chain 3: G.10, Q.11, C.12, Q.15, I.16, E.69, S.138, G.141, G.142, T.143, G.144, D.177, E.181, N.204, Y.222, L.225, N.226
- Chain 6: L.248, E.254
12 PLIP interactions:12 interactions with chain 3- Hydrogen bonds: 3:Q.11, 3:C.12, 3:S.138, 3:G.141, 3:T.143, 3:G.144, 3:D.177, 3:E.181, 3:N.204, 3:N.204, 3:N.226, 3:N.226
GDP.18: 19 residues within 4Å:- Chain 2: L.248, E.254
- Chain 5: G.10, Q.11, C.12, Q.15, I.16, E.69, S.138, G.141, G.142, T.143, G.144, D.177, E.181, N.204, Y.222, L.225, N.226
12 PLIP interactions:12 interactions with chain 5- Hydrogen bonds: 5:Q.11, 5:C.12, 5:S.138, 5:G.141, 5:T.143, 5:G.144, 5:D.177, 5:E.181, 5:N.204, 5:N.204, 5:N.226, 5:N.226
GDP.21: 17 residues within 4Å:- Chain 7: G.10, Q.11, C.12, Q.15, I.16, E.69, S.138, G.141, G.142, T.143, G.144, D.177, E.181, N.204, Y.222, L.225, N.226
12 PLIP interactions:12 interactions with chain 7- Hydrogen bonds: 7:Q.11, 7:C.12, 7:S.138, 7:G.141, 7:T.143, 7:G.144, 7:D.177, 7:E.181, 7:N.204, 7:N.204, 7:N.226, 7:N.226
- 6 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
GTP.5: 27 residues within 4Å:- Chain Q: L.246, N.247, K.252
- Chain R: G.10, Q.11, G.12, Q.15, V.16, D.69, E.71, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, N.228, I.231
- Ligands: MG.6
18 PLIP interactions:16 interactions with chain R, 2 interactions with chain Q- Hydrogen bonds: R:Q.11, R:Q.11, R:G.12, R:A.99, R:N.101, R:N.101, R:S.140, R:G.143, R:G.144, R:T.145, R:G.146, R:T.179, R:E.183, R:N.206, R:N.228, R:N.228
- Salt bridges: Q:K.252, Q:K.252
GTP.7: 27 residues within 4Å:- Chain S: G.10, Q.11, G.12, Q.15, V.16, D.69, E.71, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, N.228, I.231
- Chain U: L.246, N.247, K.252
- Ligands: MG.8
18 PLIP interactions:16 interactions with chain S, 2 interactions with chain U- Hydrogen bonds: S:Q.11, S:Q.11, S:G.12, S:A.99, S:N.101, S:N.101, S:S.140, S:G.143, S:G.144, S:T.145, S:G.146, S:T.179, S:E.183, S:N.206, S:N.228, S:N.228
- Salt bridges: U:K.252, U:K.252
GTP.10: 27 residues within 4Å:- Chain W: G.10, Q.11, G.12, Q.15, V.16, D.69, E.71, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, N.228, I.231
- Chain Y: L.246, N.247, K.252
- Ligands: MG.11
18 PLIP interactions:16 interactions with chain W, 2 interactions with chain Y- Hydrogen bonds: W:Q.11, W:Q.11, W:G.12, W:A.99, W:N.101, W:N.101, W:S.140, W:G.143, W:G.144, W:T.145, W:G.146, W:T.179, W:E.183, W:N.206, W:N.228, W:N.228
- Salt bridges: Y:K.252, Y:K.252
GTP.13: 27 residues within 4Å:- Chain 2: G.10, Q.11, G.12, Q.15, V.16, D.69, E.71, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, N.228, I.231
- Chain 3: L.246, N.247, K.252
- Ligands: MG.14
18 PLIP interactions:16 interactions with chain 2, 2 interactions with chain 3- Hydrogen bonds: 2:Q.11, 2:Q.11, 2:G.12, 2:A.99, 2:N.101, 2:N.101, 2:S.140, 2:G.143, 2:G.144, 2:T.145, 2:G.146, 2:T.179, 2:E.183, 2:N.206, 2:N.228, 2:N.228
- Salt bridges: 3:K.252, 3:K.252
GTP.16: 27 residues within 4Å:- Chain 4: G.10, Q.11, G.12, Q.15, V.16, D.69, E.71, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, N.228, I.231
- Chain 5: L.246, N.247, K.252
- Ligands: MG.17
18 PLIP interactions:16 interactions with chain 4, 2 interactions with chain 5- Hydrogen bonds: 4:Q.11, 4:Q.11, 4:G.12, 4:A.99, 4:N.101, 4:N.101, 4:S.140, 4:G.143, 4:G.144, 4:T.145, 4:G.146, 4:T.179, 4:E.183, 4:N.206, 4:N.228, 4:N.228
- Salt bridges: 5:K.252, 5:K.252
GTP.19: 27 residues within 4Å:- Chain 6: G.10, Q.11, G.12, Q.15, V.16, D.69, E.71, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, N.228, I.231
- Chain 7: L.246, N.247, K.252
- Ligands: MG.20
18 PLIP interactions:16 interactions with chain 6, 2 interactions with chain 7- Hydrogen bonds: 6:Q.11, 6:Q.11, 6:G.12, 6:A.99, 6:N.101, 6:N.101, 6:S.140, 6:G.143, 6:G.144, 6:T.145, 6:G.146, 6:T.179, 6:E.183, 6:N.206, 6:N.228, 6:N.228
- Salt bridges: 7:K.252, 7:K.252
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.6: 4 residues within 4Å:- Chain R: D.69, E.71, T.145
- Ligands: GTP.5
1 PLIP interactions:1 interactions with chain R- Metal complexes: R:E.71
MG.8: 4 residues within 4Å:- Chain S: D.69, E.71, T.145
- Ligands: GTP.7
1 PLIP interactions:1 interactions with chain S- Metal complexes: S:E.71
MG.11: 4 residues within 4Å:- Chain W: D.69, E.71, T.145
- Ligands: GTP.10
1 PLIP interactions:1 interactions with chain W- Metal complexes: W:E.71
MG.14: 4 residues within 4Å:- Chain 2: D.69, E.71, T.145
- Ligands: GTP.13
1 PLIP interactions:1 interactions with chain 2- Metal complexes: 2:E.71
MG.17: 4 residues within 4Å:- Chain 4: D.69, E.71, T.145
- Ligands: GTP.16
1 PLIP interactions:1 interactions with chain 4- Metal complexes: 4:E.71
MG.20: 4 residues within 4Å:- Chain 6: D.69, E.71, T.145
- Ligands: GTP.19
1 PLIP interactions:1 interactions with chain 6- Metal complexes: 6:E.71
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kubo, S. et al., Remodeling and activation mechanisms of outer arm dyneins revealed by cryo-EM. Embo Rep. (2021)
- Release Date
- 2021-07-14
- Peptides
- Dynein-1-alpha heavy chain, flagellar inner arm I1 complex protein, putative: A
Outer arm dynein beta heavy chain: B
Dynein heavy chain, outer arm protein: C
Dynein intermediate chain 2: D0
Flagellar outer dynein arm intermediate protein, putative: E1
Dynein light chain roadblock-type 2 protein: F
Dynein light chain roadblock-type 2 protein: G
Dynein light chain: H
Dynein light chain: I
Dynein light chain: J
Dynein light chain: K
Dynein light chain: L
Dynein light chain: M
Dynein light chain 2A: N
Dynein light chain tctex-type 1 protein: O
Thioredoxin: P
Tubulin beta chain: QUY357
Tubulin alpha chain: RSW246
Outer dynein arm docking complex protein oda protein: T
Docking complex 1/2 protein: V8
Docking complex 1 protein: X
Outer dynein arm docking complex protein oda protein: Z - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D0
dE
E1
eF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QU
UY
Y3
u5
q7
yR
RS
SW
W2
s4
r6
wT
TV
V8
xX
XZ
Z
SMTL ID : 7moq.1
The structure of the Tetrahymena thermophila outer dynein arm on doublet microtubule
Dynein-1-alpha heavy chain, flagellar inner arm I1 complex protein, putative
Outer arm dynein beta heavy chain
Dynein heavy chain, outer arm protein
Dynein intermediate chain 2
Flagellar outer dynein arm intermediate protein, putative
Dynein light chain roadblock-type 2 protein
Dynein light chain roadblock-type 2 protein
Dynein light chain
Dynein light chain
Dynein light chain
Dynein light chain
Dynein light chain
Dynein light chain
Dynein light chain 2A
Dynein light chain tctex-type 1 protein
Thioredoxin
Tubulin beta chain
Toggle Identical (QUY357)Tubulin alpha chain
Toggle Identical (RSW246)Outer dynein arm docking complex protein oda protein
Docking complex 1/2 protein
Docking complex 1 protein
Outer dynein arm docking complex protein oda protein
Related Entries With Identical Sequence
4v5e.1 | 4v5e.2 | 4v5j.1 | 4v5j.2 | 4v5l.1 | 4v8q.1 | 4v8x.1 | 4v8x.2 | 4wt8.1 | 4wt8.2 | 5j4z.33 | 5j7y.33 | 5j8k.33 | 5nw4.1 | 6c5l.1 | 6c5l.2 | 6l4u.1 | 6u0h.1 | 6u0t.1 | 6u0u.1 | 6zyw.1 | 6zyx.1 | 6zyy.1 | 7k58.1 | 7k5b.1 | 7kek.1 | 7mwg.1 | 7n32.1 | 7pje.1 | 7pje.2 more...less...8bwy.1 | 8bx8.1 | 8g2z.110 | 8g2z.111 | 8g2z.112 | 8g2z.113 | 8g2z.114 | 8g2z.115 | 8g2z.116 | 8g2z.117 | 8g2z.118 | 8g2z.119 | 8g2z.120 | 8g2z.121 | 8g2z.122 | 8g2z.123 | 8g2z.124 | 8g2z.125 | 8g2z.126 | 8g2z.127 | 8g2z.128 | 8g2z.129 | 8g2z.130 | 8g2z.131 | 8g2z.132 | 8g2z.133 | 8g2z.134 | 8g2z.135 | 8g2z.136 | 8g2z.137 | 8g2z.138 | 8g2z.139 | 8g2z.140 | 8g2z.141 | 8g2z.142 | 8g2z.143 | 8g2z.144 | 8g2z.145 | 8g2z.146 | 8g2z.147 | 8g2z.148 | 8g2z.149 | 8g2z.150 | 8g2z.151 | 8g2z.152 | 8g2z.153 | 8g2z.154 | 8g2z.155 | 8g2z.156 | 8g2z.157 | 8g2z.158 | 8g2z.159 | 8g2z.160 | 8g2z.161 | 8g2z.162 | 8g2z.163 | 8g2z.164 | 8g2z.165 | 8g2z.166 | 8g2z.167 | 8g2z.168 | 8g2z.169 | 8g2z.170 | 8g2z.171 | 8g2z.172 | 8g2z.173 | 8g2z.174 | 8g2z.175 | 8g2z.176 | 8g2z.177 | 8g2z.178 | 8g2z.179 | 8g2z.180 | 8g2z.181 | 8g2z.182 | 8g2z.183 | 8g2z.184 | 8g2z.185 | 8g2z.186 | 8g2z.187 | 8g2z.188 | 8g2z.189 | 8g2z.190 | 8g2z.191 | 8g2z.192 | 8g2z.193 | 8g2z.194 | 8g2z.195 | 8g2z.196 | 8g2z.197 | 8g2z.198 | 8g2z.199 | 8g2z.200 | 8g2z.201 | 8g2z.202 | 8g2z.203 | 8g2z.204 | 8g2z.205 | 8g2z.206 | 8g2z.207 | 8g2z.208 | 8g2z.209 | 8g2z.210 | 8g2z.211 | 8g2z.212 | 8g2z.213 | 8g2z.214 | 8g2z.215 | 8g2z.216 | 8g2z.217 | 8g2z.218 | 8g2z.219 | 8g2z.220 | 8g2z.221 | 8g2z.222 | 8g2z.223 | 8g2z.224 | 8g2z.225 | 8g2z.226 | 8g2z.227 | 8g2z.228 | 8g2z.229 | 8g2z.230 | 8g2z.231 | 8g2z.232 | 8g2z.233 | 8g2z.234 | 8g2z.235 | 8g2z.236 | 8g2z.237 | 8g2z.238 | 8g2z.239 | 8g2z.240 | 8g2z.241 | 8g2z.242 | 8g2z.243 | 8g2z.244 | 8g2z.245 | 8g2z.246 | 8g2z.247 | 8g2z.248 | 8g2z.249 | 8g2z.250 | 8g2z.251 | 8g2z.252 | 8g2z.253 | 8g2z.254 | 8g2z.255 | 8g2z.256 | 8g2z.257 | 8g2z.258 | 8g2z.259 | 8g2z.260 | 8g2z.261 | 8g2z.262 | 8g2z.263 | 8g2z.264 | 8g2z.265 | 8g2z.266 | 8g2z.267 | 8g2z.268 | 8g2z.269 | 8g2z.270 | 8g2z.271 | 8g2z.272 | 8g2z.273 | 8g2z.274 | 8g2z.275 | 8g2z.276 | 8g2z.277 | 8g2z.278 | 8g2z.279 | 8g2z.280 | 8g2z.281 | 8g2z.282 | 8g2z.283 | 8g2z.284 | 8g2z.285 | 8g2z.286 | 8g2z.287 | 8g2z.288 | 8g2z.289 | 8g2z.290 | 8g2z.291 | 8g2z.292 | 8g2z.293 | 8g2z.294 | 8g2z.295 | 8g2z.296 | 8g2z.297 | 8g2z.298 | 8g2z.299 | 8g2z.300 | 8g2z.301 | 8g2z.302 | 8g2z.303 | 8g2z.304 | 8g2z.305 | 8g2z.306 | 8g2z.307 | 8g2z.308 | 8g2z.309 | 8g2z.310 | 8g2z.311 | 8g2z.312 | 8g2z.313 | 8g2z.314 | 8g2z.315 | 8g2z.316 | 8g2z.317 | 8g2z.318 | 8g2z.319 | 8g2z.320 | 8g2z.321 | 8g2z.322 | 8g2z.323 | 8g2z.324 | 8g2z.325 | 8g2z.326 | 8g2z.327 | 8g2z.328 | 8g2z.329 | 8g2z.330 | 8g2z.331 | 8g2z.332 | 8g2z.333 | 8g2z.334 | 8g2z.335 | 8g2z.336 | 8g2z.337 | 8g2z.338 | 8g2z.339 | 8g2z.340 | 8g2z.341 | 8g2z.342 | 8g2z.343 | 8g2z.344 | 8g2z.345 | 8g2z.346 | 8g2z.347 | 8g2z.348 | 8g2z.349 | 8g2z.350 | 8g2z.351 | 8g2z.352 | 8g2z.353 | 8g2z.354 | 8g2z.355 | 8g2z.356 | 8g2z.357 | 8g2z.358 | 8g2z.359 | 8g2z.360 | 8g2z.361 | 8g2z.362 | 8g2z.363 | 8g2z.364 | 8g2z.365 | 8g2z.366 | 8g2z.367 | 8g2z.368 | 8g2z.369 | 8g2z.370 | 8g2z.371 | 8g2z.372 | 8g2z.373 | 8g2z.374 | 8g2z.375 | 8g2z.376 | 8g2z.377 | 8g2z.378 | 8g2z.379 | 8g2z.380 | 8g2z.381 | 8g2z.382 | 8g2z.383 | 8g2z.384 | 8g2z.385 | 8g2z.386 | 8g2z.387 | 8g2z.388 | 8g2z.389 | 8g2z.390 | 8g2z.391 | 8g2z.392 | 8g2z.393 | 8g2z.394 | 8g2z.395 | 8g2z.396 | 8g2z.397 | 8g2z.398 | 8g2z.399 | 8g2z.400 | 8g2z.401 | 8g2z.402 | 8g2z.403 | 8g2z.404 | 8g2z.405 | 8g2z.406 | 8g2z.407 | 8g2z.408 | 8g2z.409 | 8g2z.410 | 8g2z.411 | 8g2z.412 | 8g2z.413 | 8g2z.414 | 8g2z.415 | 8g2z.416 | 8g2z.417 | 8g2z.418 | 8g2z.419 | 8g2z.420 | 8g2z.421 | 8g2z.422 | 8g2z.423 | 8g2z.424 | 8g2z.425 | 8g2z.426 | 8g2z.427 | 8g2z.428 | 8g2z.429 | 8g2z.430 | 8g2z.431 | 8g3d.111 | 8g3d.113 | 8g3d.115 | 8g3d.117 | 8g3d.119 | 8g3d.121 | 8g3d.123 | 8g3d.125 | 8g3d.127 | 8g3d.129 | 8g3d.131 | 8g3d.133 | 8g3d.135 | 8g3d.137 | 8g3d.139 | 8g3d.141 | 8g3d.143 | 8g3d.145 | 8g3d.147 | 8g3d.149 | 8g3d.151 | 8g3d.153 | 8g3d.155 | 8g3d.157 | 8g3d.159 | 8g3d.161 | 8g3d.163 | 8g3d.165 | 8g3d.167 | 8g3d.169 | 8g3d.171 | 8g3d.173 | 8g3d.175 | 8g3d.177 | 8g3d.179 | 8g3d.181 | 8g3d.183 | 8g3d.185 | 8g3d.187 | 8g3d.189 | 8g3d.191 | 8g3d.193 | 8g3d.195 | 8g3d.197 | 8g3d.199 | 8g3d.201 | 8g3d.203 | 8g3d.205 | 8g3d.207 | 8g3d.209 | 8g3d.211 | 8g3d.213 | 8g3d.215 | 8g3d.217 | 8g3d.219 | 8g3d.221 | 8g3d.223 | 8g3d.225 | 8g3d.227 | 8g3d.229 | 8g3d.231 | 8g3d.233 | 8g3d.235 | 8g3d.237 | 8g3d.239 | 8g3d.241 | 8g3d.243 | 8g3d.245 | 8g3d.247 | 8g3d.249 | 8g3d.251 | 8g3d.253 | 8g3d.255 | 8g3d.257 | 8g3d.259 | 8g3d.261 | 8g3d.263 | 8g3d.265 | 8g3d.267 | 8g3d.269 | 8g3d.271 | 8g3d.273 | 8g3d.275 | 8g3d.277 | 8g3d.279 | 8g3d.281 | 8g3d.283 | 8g3d.285 | 8g3d.287 | 8g3d.289 | 8g3d.291 | 8g3d.293 | 8g3d.295 | 8g3d.297 | 8g3d.299 | 8g3d.301 | 8g3d.303 | 8g3d.305 | 8g3d.307 | 8g3d.309 | 8g3d.311 | 8g3d.313 | 8g3d.315 | 8g3d.317 | 8g3d.319 | 8g3d.321 | 8g3d.323 | 8g3d.325 | 8g3d.327 | 8g3d.329 | 8g3d.331 | 8g3d.333 | 8g3d.335 | 8g3d.337 | 8g3d.339 | 8g3d.341 | 8g3d.343 | 8g3d.345 | 8g3d.347 | 8g3d.349 | 8g3d.351 | 8g3d.353 | 8g3d.355 | 8g3d.357 | 8g3d.359 | 8g3d.361 | 8g3d.363 | 8g3d.365 | 8g3d.367 | 8g3d.369 | 8g3d.371 | 8g3d.373 | 8g3d.375 | 8g3d.377 | 8g3d.379 | 8g3d.381 | 8g3d.383 | 8g3d.385 | 8g3d.387 | 8g3d.389 | 8g3d.391 | 8g3d.393 | 8g3d.395 | 8g3d.397 | 8g3d.399 | 8g3d.401 | 8g3d.403 | 8g3d.405 | 8g3d.407 | 8g3d.409 | 8g3d.411 | 8g3d.413 | 8g3d.415 | 8g3d.417 | 8g3d.419 | 8g3d.421 | 8g3d.423 | 8g3d.425 | 8g3d.427 | 8g3d.429 | 8g3d.431