SMTL ID : 7mrh.1

Crystal structure of the first bromodomain (BD1) of human BRDT bound to NC-II-259

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

2 x ZMJ: N-[3-(2-methyl-1-oxo-1,2-dihydroisoquinolin-4-yl)phenyl]ethanesulfonamide(Non-covalent)

ZMJ.1: 13 residues within 4Å: Chain A: W.26, P.27, F.28, R.30, P.31, V.32, D.33, K.36, L.37, L.39, C.81, N.85, I.91 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.26, A:R.30, A:L.37, A:L.37, A:L.37, A:L.39 Hydrogen bonds: A:D.33 ZMJ.2: 13 residues within 4Å: Chain B: W.26, P.27, F.28, R.30, P.31, V.32, D.33, K.36, L.37, L.39, C.81, N.85, I.91 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:W.26, B:R.30, B:L.37, B:L.37, B:L.39 Hydrogen bonds: B:D.33, B:N.85 Water bridges: B:K.36, B:K.36, B:K.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guan, X. et al., Bivalent BET Bromodomain Inhibitors Confer Increased Potency and Selectivity for BRDT via Protein Conformational Plasticity. J.Med.Chem. (2022)

Release Date

2022-08-03

Peptides

Bromodomain testis-specific protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bromodomain testis-specific protein

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