SMTL ID : 7n3l.1

Co-complex CYP46A1 with 0420 (compound 6)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: K.84, Y.89, L.105, V.106, W.114, R.118, F.125, F.279, A.282, G.283, T.286, S.287, H.290, A.347, T.350, P.409, F.410, S.411, R.415, S.416, C.417, I.418, G.419, F.422, A.423 Ligands: 04Y.3 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:L.105, A:V.106, A:F.125, A:F.279, A:F.279, A:A.282, A:H.290, A:F.410, A:I.418, A:F.422 Hydrogen bonds: A:Y.89, A:T.350 Water bridges: A:K.84, A:R.352, A:S.411, A:R.415 Salt bridges: A:K.84, A:R.118, A:R.415 Metal complexes: A:C.417

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: P.346, A.347, W.348, G.349, A.454 Ligands: 04Y.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.348, A:G.349, A:G.349, A:A.454 EDO.5: 7 residues within 4Å: Chain A: N.83, K.84, C.109, Y.111, W.114, H.414, R.415 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.83, A:K.84, A:R.415

1 x 04Y: N-cyclopropyl-1-(4-phenylpyridin-3-yl)piperidine-4-carboxamide(Non-covalent)

04Y.3: 17 residues within 4Å: Chain A: F.60, M.88, Y.89, L.92, F.101, V.106, L.199, R.206, I.281, A.282, E.285, T.286, F.351, A.454, T.455 Ligands: HEM.1, EDO.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.60, A:Y.89, A:F.101, A:F.101, A:V.106, A:L.199, A:I.281, A:A.282, A:E.285, A:E.285, A:T.286, A:F.351, A:A.454, A:T.455 Hydrogen bonds: A:R.206, A:R.206, A:T.286 Water bridges: A:Y.89, A:Y.89

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: E.71, S.72, K.75, F.76, I.360, D.361 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.75, A:D.361, A:D.361 Water bridges: A:G.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kajita, Y. et al., Discovery of Novel 3-Piperidinyl Pyridine Derivatives as Highly Potent and Selective Cholesterol 24-Hydroxylase (CH24H) Inhibitors. J.Med.Chem. (2022)

Release Date

2022-02-23

Peptides

Cholesterol 24-hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cholesterol 24-hydroxylase

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