SMTL ID : 7n64.1

SARS-CoV-2 Spike (2P) in complex with G32R7 Fab (RBD and NTD local reconstruction)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.122, T.124 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 3 residues within 4Å: Chain B: F.342, N.343 Chain C: W.107 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: C.15, N.17, N.137 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.137 NAG.4: 4 residues within 4Å: Chain A: E.132, N.165 Chain C: A.74, K.75 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tong, P. et al., Memory B cell repertoire for recognition of evolving SARS-CoV-2 spike. Biorxiv (2021)

Release Date

2021-08-04

Peptides

Spike glycoprotein: AB
G32R7 Fab heavy chain: C
G32R7 Fab light chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

Spike glycoprotein

G32R7 Fab heavy chain

G32R7 Fab light chain

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