SMTL ID : 7nbw.1

Crystal structure of PqsR (MvfR) ligand-binding domain in complex with a pyridin agonist

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

2 x U7Q: ~{N}-[3-(4-fluorophenyl)prop-2-ynyl]-2-(trifluoromethyl)pyridin-4-amine(Non-covalent)

U7Q.1: 18 residues within 4Å: Chain A: A.12, P.39, I.59, A.78, V.80, I.96, L.99, L.117, L.118, V.121, F.131, W.144, I.146, A.147, P.148, Y.168, I.173, T.175 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.59, A:A.78, A:V.80, A:L.118, A:I.146, A:I.173 Hydrogen bonds: A:T.175, A:T.175 pi-Stacking: A:Y.168 U7Q.2: 18 residues within 4Å: Chain B: A.12, P.39, I.59, A.78, V.80, I.96, L.99, L.117, L.118, V.121, F.131, W.144, I.146, A.147, P.148, Y.168, I.173, T.175 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.59, B:A.78, B:V.80, B:L.118, B:I.146, B:I.173 Hydrogen bonds: B:T.175, B:T.175 pi-Stacking: B:Y.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schutz, C. et al., Divergent synthesis and biological evaluation of 2-(trifluoromethyl)pyridines as virulence-attenuating inverse agonists targeting PqsR. Eur.J.Med.Chem. (2021)

Release Date

2021-10-06

Peptides

Transcriptional regulator MvfR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Transcriptional regulator MvfR

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