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SMTL ID : 7nnf.2
(1 other biounit)
Crystal structure of Mycobacterium tuberculosis ArgF in apo form.
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.52 Å
Oligo State
homo-trimer
Ligands
6 x
PO4
:
PHOSPHATE ION
(Non-functional Binders)
PO4.1:
4 residues within 4Å:
Chain A:
N.250
,
S.251
,
T.276
,
A.278
9
PLIP interactions
:
9 interactions with chain A
Hydrogen bonds:
A:S.251
,
A:S.251
,
A:T.276
,
A:T.276
,
A:T.276
Water bridges:
A:N.250
,
A:R.252
,
A:R.252
,
A:A.278
PO4.2:
8 residues within 4Å:
Chain A:
S.52
,
R.54
,
T.55
,
L.125
,
H.130
,
C.266
,
L.267
,
R.294
8
PLIP interactions
:
8 interactions with chain A
Hydrogen bonds:
A:S.52
Water bridges:
A:R.54
,
A:R.54
,
A:Q.133
,
A:L.267
Salt bridges:
A:R.54
,
A:H.130
,
A:R.294
PO4.3:
3 residues within 4Å:
Chain A:
H.69
Chain B:
H.69
Chain C:
H.69
13
PLIP interactions
:
5 interactions with chain B
,
4 interactions with chain A
,
4 interactions with chain C
Water bridges:
B:G.68
,
B:H.69
,
B:H.69
,
B:H.69
,
A:E.60
,
A:H.69
,
A:A.70
,
C:G.68
,
C:H.69
,
C:A.70
Salt bridges:
B:H.69
,
A:H.69
,
C:H.69
PO4.4:
7 residues within 4Å:
Chain B:
S.52
,
R.54
,
T.55
,
L.125
,
H.130
,
L.267
,
R.294
11
PLIP interactions
:
11 interactions with chain B
Hydrogen bonds:
B:S.52
,
B:L.267
,
B:L.267
Water bridges:
B:R.54
,
B:R.54
,
B:R.54
,
B:L.267
,
B:R.294
Salt bridges:
B:R.54
,
B:H.130
,
B:R.294
PO4.5:
4 residues within 4Å:
Chain B:
N.250
,
S.251
,
T.276
,
A.278
8
PLIP interactions
:
8 interactions with chain B
Hydrogen bonds:
B:S.251
,
B:S.251
,
B:S.251
,
B:S.251
,
B:T.276
,
B:T.276
Water bridges:
B:N.250
,
B:A.278
PO4.6:
4 residues within 4Å:
Chain C:
N.250
,
S.251
,
R.252
,
T.276
5
PLIP interactions
:
5 interactions with chain C
Hydrogen bonds:
C:S.251
,
C:S.251
,
C:R.252
,
C:T.276
,
C:T.276
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Gupta, P. et al., A fragment-based approach to assess the ligandability of ArgB, ArgC, ArgD and ArgF in the L-arginine biosynthetic pathway of Mycobacterium tuberculosis. Comput Struct Biotechnol J (2021)
Release Date
2021-06-30
Peptides
Ornithine carbamoyltransferase:
A
B
C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
D
B
E
C
F
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Secondary Structure
None
DSSP
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2° Structure
Bfactor
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Ornithine carbamoyltransferase
Related Entries With Identical Sequence
7nnf.1
|
7nnv.1
|
7nnv.2
|
7nnw.1
|
7nnw.2
|
7nny.1
|
7nny.2
|
7nnz.1
|
7nnz.2
|
7nor.1
|
7nor.2
|
7nos.1
|
7nos.2
|
7nou.1
|
7nou.2
|
7nov.1
|
7nov.2
|
7np0.1
|
7np0.2
Cartoon
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