SMTL ID : 7nri.1

Structure of the darobactin-bound E. coli BAM complex (BamABCDE)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x TRP- ASN- UX8- SER- LYS- SER- PHE: 3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE(Non-covalent)

TRP-ASN-UX8-SER-LYS-SER-PHE.1: 19 residues within 4Å: Chain A: N.402, G.404, S.405, F.406, N.407, F.408, G.409, I.410, G.411, Q.421, V.424, Q.425, Q.426, P.759, L.760, G.761, I.786, G.787, K.788 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.406, A:V.424 Hydrogen bonds: A:N.402, A:G.404, A:G.404, A:G.404, A:F.406, A:F.406, A:N.407, A:N.407, A:F.408, A:F.408, A:I.410, A:I.410

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaur, H. et al., The antibiotic darobactin mimics a beta-strand to inhibit outer membrane insertase. Nature (2021)

Release Date

2021-04-21

Peptides

Outer membrane protein assembly factor BamA: A
Outer membrane protein assembly factor BamB: B
Outer membrane protein assembly factor BamC: C
Outer membrane protein assembly factor BamD: D
Outer membrane protein assembly factor BamE: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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Outer membrane protein assembly factor BamA

Outer membrane protein assembly factor BamB

Outer membrane protein assembly factor BamC

Outer membrane protein assembly factor BamD

Outer membrane protein assembly factor BamE

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