SMTL ID : 8bvq.1

E. coli BAM complex (BamABCDE) bound to darobactin B

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x TRP- ASN- UX8- THR- LYS- ARG- PHE: Darobactin-B(Non-covalent)

TRP-ASN-UX8-THR-LYS-ARG-PHE.1: 18 residues within 4Å: Chain A: G.373, R.401, N.402, G.404, S.405, F.406, N.407, F.408, G.409, I.410, G.411, V.424, Q.425, Q.426, L.760, G.761, G.787, K.788 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.406, A:F.406, A:I.410, A:V.424 Hydrogen bonds: A:G.404, A:F.406, A:F.406, A:F.408, A:F.408, A:I.410, A:I.410

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haysom, S.F. et al., Darobactin B Stabilises a Lateral-Closed Conformation of the BAM Complex in E. coli Cells. Angew.Chem.Int.Ed.Engl. (2023)

Release Date

2023-05-24

Peptides

Outer membrane protein assembly factor BamA: A
Outer membrane protein assembly factor BamB: B
Outer membrane protein assembly factor BamC: C
Outer membrane protein assembly factor BamD: D
Outer membrane protein assembly factor BamE: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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Outer membrane protein assembly factor BamA

Outer membrane protein assembly factor BamB

Outer membrane protein assembly factor BamC

Outer membrane protein assembly factor BamD

Outer membrane protein assembly factor BamE

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