SMTL ID : 8pzv.1

Wait Complex: BAM bound Darobactin-B and Extended SurA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x TRP- ASN- UX8- THR- LYS- ARG- PHE: Darobactin-B

TRP-ASN-UX8-THR-LYS-ARG-PHE.1: 24 residues within 4Å: Chain A: G.373, F.374, R.401, N.402, T.403, G.404, S.405, F.406, N.407, F.408, G.409, I.410, G.411, Q.421, V.424, Q.425, Q.426, D.427, P.759, L.760, G.761, P.762, G.787, K.788 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.406, A:F.406, A:F.406, A:F.406, A:I.410, A:V.424 Hydrogen bonds: A:G.373, A:G.373, A:R.401, A:G.404, A:G.404, A:F.406, A:F.406, A:N.407, A:F.408, A:F.408, A:I.410, A:Q.421, A:G.787 Salt bridges: A:D.427

1 x MG: MAGNESIUM ION

MG.2: 7 residues within 4Å: Chain B: S.174, L.175, G.177, E.178, D.193, D.227, D.229 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:L.175, B:G.177, B:D.193, B:D.229, B:D.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fenn, K.L. et al., Outer membrane protein assembly mediated by BAM-SurA complexes. Nat Commun (2024)

Release Date

2024-09-25

Peptides

Outer membrane protein assembly factor BamA: A
Outer membrane protein assembly factor BamB: B
Outer membrane protein assembly factor BamC: C
Outer membrane protein assembly factor BamD: D
Outer membrane protein assembly factor BamE: E
Chaperone SurA: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Membrane

We predict this structure to be a membrane protein.
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Outer membrane protein assembly factor BamA

Outer membrane protein assembly factor BamB

Outer membrane protein assembly factor BamC

Outer membrane protein assembly factor BamD

Outer membrane protein assembly factor BamE

Chaperone SurA

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