- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-7-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 221 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 3 x ZN: ZINC ION(Non-covalent)
ZN.6: 4 residues within 4Å:- Chain Y: C.70, C.73, C.108
- Chain n: C.64
4 PLIP interactions:3 interactions with chain Y, 1 interactions with chain n- Metal complexes: Y:C.70, Y:C.73, Y:C.108, n:C.64
ZN.7: 4 residues within 4Å:- Chain 4: C.73, C.76, C.89, H.95
4 PLIP interactions:4 interactions with chain 4- Metal complexes: 4:C.73, 4:C.76, 4:C.89, 4:H.95
ZN.218: 4 residues within 4Å:- Chain b: C.110, C.113, C.123, C.126
4 PLIP interactions:4 interactions with chain b- Metal complexes: b:C.110, b:C.113, b:C.123, b:C.126
- 2 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-functional Binders)(Non-covalent)
5GP.213: 4 residues within 4Å:- Chain 7: C.1235, G.1245, A.1246, A.1255
No protein-ligand interaction detected (PLIP)5GP.214: 9 residues within 4Å:- Chain 7: G.187, A.366, A.367, A.368, A.430, U.598, A.599
- Ligands: MG.204
- Chain w: K.182
1 PLIP interactions:1 interactions with chain w- Salt bridges: w:K.182
- 2 x SPM: SPERMINE(Non-covalent)
SPM.215: 8 residues within 4Å:- Chain 7: G.295, C.296, A.297, A.689, C.763, A.764
- Chain x: Y.156, H.157
No protein-ligand interaction detected (PLIP)SPM.216: 9 residues within 4Å:- Chain 7: A.788, C.1556, C.1557, U.1558, G.1560
- Chain s: S.10, R.13, V.14, R.16
3 PLIP interactions:3 interactions with chain s- Hydrophobic interactions: s:R.13
- Hydrogen bonds: s:S.10, s:V.14
- 1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
GNP.219: 20 residues within 4Å:- Ligands: MG.220
- Chain f: H.54, I.55, D.56, A.57, G.58, K.59, T.60, T.61, V.79, I.97, T.98, P.119, H.121, N.171, K.172, D.174, S.307, A.308, L.309
21 PLIP interactions:21 interactions with chain f- Hydrogen bonds: f:D.56, f:D.56, f:A.57, f:G.58, f:K.59, f:K.59, f:T.60, f:T.60, f:T.61, f:T.61, f:T.98, f:T.98, f:P.119, f:P.119, f:K.172, f:K.172, f:A.308, f:L.309
- Water bridges: f:T.60, f:T.60
- Salt bridges: f:D.174
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kummer, E. et al., Structural basis of translation termination, rescue, and recycling in mammalian mitochondria. Mol.Cell (2021)
- Release Date
- 2021-05-05
- Peptides
- Mitochondrial ribosomal protein L27: A
uL24m: B
Mitochondrial ribosomal protein L37: C
Mitochondrial ribosomal protein L35: D
Mitochondrial ribosomal protein L38: E
Mitochondrial ribosomal protein L39: F
Mitochondrial ribosomal protein L40: G
Mitochondrial ribosomal protein L41: H
mL42: I
Mitochondrial ribosomal protein L43: J
mL44: K
Mitochondrial ribosomal protein L45: L
Mitochondrial ribosomal protein L46: M
39S ribosomal protein L48, mitochondrial: N
Mrpl34: O
Mitochondrial ribosomal protein L50: P
Mitochondrial ribosomal protein L51: Q
mL52: R
mL53: S
mL54: T
Mitochondrial ribosomal protein L57: U
mL62 (ICT1): V
mL64: W
39S ribosomal protein S30, mitochondrial: X
Mitochondrial ribosomal protein S18A: Y
Mitochondrial ribosomal protein L12: Z12356j
Mitochondrial ribosomal protein L28: 0
Ribosomal protein: 4
Mitochondrial ribosomal protein L47: 8
uL30m: 9
bL31m: a
bL32m: b
bL33m: c
Mitochondrial ribosomal protein L34: d
Ribosome-releasing factor 2, mitochondrial: f
uL2m: g
Ribosome-recycling factor, mitochondrial: h
uL16m: i
ICT1: k
Mitochondrial ribosomal protein L4: l
Mitochondrial ribosomal protein L9: m
Mitochondrial ribosomal protein L10: n
Mitochondrial ribosomal protein L11: o
uL13m: p
uL14m: q
uL15m: r
bL17m: s
Mitochondrial ribosomal protein L18: t
Mitochondrial ribosomal protein L19: u
Mitochondrial ribosomal protein L20: v
Mitochondrial ribosomal protein L21: w
uL22m: x
uL23m: y - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B0B
BYC
BaD
B8E
BbF
BcG
BdH
BeI
BfJ
BgK
BhL
BiM
BjN
BkO
BlP
BmQ
BnR
BoS
BpT
BqU
BtV
BuW
BvX
BwY
BxZ
CL1
DL2
EL3
FL5
GL6
HLj
LL0
B14
B98
B29
B3a
B4b
B5c
B6d
B7f
BCg
BDh
BGi
BQk
BEl
BFm
BIn
BJo
BKp
BNq
BOr
BPs
BRt
BSu
BTv
BUw
BVx
BWy
BX
SMTL ID : 7nsh.1
39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2
Mitochondrial ribosomal protein L27
uL24m
Mitochondrial ribosomal protein L37
Mitochondrial ribosomal protein L35
Mitochondrial ribosomal protein L38
Mitochondrial ribosomal protein L39
Mitochondrial ribosomal protein L40
Mitochondrial ribosomal protein L41
mL42
Mitochondrial ribosomal protein L43
mL44
Mitochondrial ribosomal protein L45
Mitochondrial ribosomal protein L46
39S ribosomal protein L48, mitochondrial
Mrpl34
Mitochondrial ribosomal protein L50
Mitochondrial ribosomal protein L51
mL52
mL53
mL54
Mitochondrial ribosomal protein L57
mL62 (ICT1)
mL64
39S ribosomal protein S30, mitochondrial
Mitochondrial ribosomal protein S18A
Mitochondrial ribosomal protein L12
Toggle Identical (135)Mitochondrial ribosomal protein L28
Ribosomal protein
Mitochondrial ribosomal protein L47
uL30m
bL31m
bL32m
bL33m
Mitochondrial ribosomal protein L34
Ribosome-releasing factor 2, mitochondrial
uL2m
Ribosome-recycling factor, mitochondrial
uL16m
ICT1
Mitochondrial ribosomal protein L4
Mitochondrial ribosomal protein L9
Mitochondrial ribosomal protein L10
Mitochondrial ribosomal protein L11
uL13m
uL14m
uL15m
bL17m
Mitochondrial ribosomal protein L18
Mitochondrial ribosomal protein L19
Mitochondrial ribosomal protein L20
Mitochondrial ribosomal protein L21
uL22m
uL23m
Related Entries With Identical Sequence
4ce4.1 | 4v19.1 | 4v1a.1 | 6gaw.1 | 6gaw.2 | 6gaw.3 | 6gaw.4 | 6gaw.5 | 6gaw.6 | 6gaw.7 | 6gaw.8 | 6gaw.9 | 6gaw.11 | 6gaw.12 | 6gaw.13 | 6gaw.14 | 6gaw.15 | 6gaw.16 | 6gaw.18 | 6gaw.20 | 6gaw.21 | 6gaw.22 | 6gaw.23 | 6gaw.24 | 6gaw.25 | 6gaw.26 | 6gaw.27 | 6gaw.28 | 6gaw.29 | 6gaw.30 more...less...6gaw.31 | 6gaw.32 | 6gaw.33 | 6gaw.34 | 6gaw.35 | 6gaw.36 | 6gaw.37 | 6gaw.38 | 6gaw.39 | 6gaw.40 | 6gaw.41 | 6gaw.42 | 6gaw.43 | 6gaw.44 | 6gaw.45 | 6gaw.46 | 6gaw.48 | 6gaw.50 | 6gaw.51 | 6gaw.53 | 6gaw.54 | 6gaw.55 | 6gaw.56 | 6gaw.57 | 6gaw.58 | 6gaz.1 | 6gb2.1 | 7nql.1 | 7nql.2 | 7nql.3 | 7nql.4 | 7nql.5 | 7nql.6 | 7nql.7 | 7nql.8 | 7nql.9 | 7nql.11 | 7nql.12 | 7nql.13 | 7nql.14 | 7nql.15 | 7nql.16 | 7nql.17 | 7nql.18 | 7nql.19 | 7nql.20 | 7nql.21 | 7nql.22 | 7nql.23 | 7nql.24 | 7nql.25 | 7nql.26 | 7nql.27 | 7nql.28 | 7nql.29 | 7nql.30 | 7nql.31 | 7nql.32 | 7nql.33 | 7nql.34 | 7nql.35 | 7nql.36 | 7nql.37 | 7nql.38 | 7nql.39 | 7nql.40 | 7nql.41 | 7nql.42 | 7nql.43 | 7nql.44 | 7nql.45 | 7nql.46 | 7nql.47 | 7nql.61 | 7nql.79 | 7nql.80 | 7nql.81 | 7nql.82 | 7nql.83 | 7nql.84 | 7nql.85 | 7nql.86 | 7nql.87 | 7nsj.1 | 7nsj.2 | 7nsj.3 | 7nsj.4 | 7nsj.5 | 7nsj.6 | 7nsj.7 | 7nsj.8 | 7nsj.9 | 7nsj.10 | 7nsj.11 | 7nsj.12 | 7nsj.13 | 7nsj.14 | 7nsj.15 | 7nsj.16 | 7nsj.17 | 7nsj.18 | 7nsj.19 | 7nsj.20 | 7nsj.21 | 7nsj.22 | 7nsj.23 | 7nsj.24 | 7nsj.25 | 7nsj.26 | 7nsj.27 | 7nsj.28 | 7nsj.29 | 7nsj.30 | 7nsj.31 | 7nsj.32 | 7nsj.33 | 7nsj.34 | 7nsj.35 | 7nsj.36 | 7nsj.37 | 7nsj.38 | 7nsj.39 | 7nsj.40 | 7nsj.41 | 7nsj.42 | 7nsj.43 | 7nsj.44 | 7nsj.45 | 7nsj.46 | 7nsj.47 | 7nsj.48 | 7nsj.49 | 7nsj.50 | 7nsj.81 | 7nsj.82 | 7nsj.83 | 7nsj.84 | 7nsj.85 | 7nsj.86 | 8oin.1 | 8oin.2 | 8oin.3 | 8oin.4 | 8oin.5 | 8oin.6 | 8oin.7 | 8oin.8 | 8oin.9 | 8oin.10 | 8oin.11 | 8oin.13 | 8oin.15 | 8oin.16 | 8oin.17 | 8oin.18 | 8oin.19 | 8oin.20 | 8oin.21 | 8oin.23 | 8oin.26 | 8oin.27 | 8oin.28 | 8oin.31 | 8oin.32 | 8oin.34 | 8oin.35 | 8oin.36 | 8oin.37 | 8oin.38 | 8oin.39 | 8oin.40 | 8oin.41 | 8oin.43 | 8oin.44 | 8oin.45 | 8oin.46 | 8oin.48 | 8oin.49 | 8oin.51 | 8oin.52 | 8oin.53 | 8oin.54 | 8oin.55 | 8oin.56 | 8oin.57 | 8oip.1 | 8oiq.1