SMTL ID : 7nth.1

Structure of TAK1 in complex with compound 54

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: P.96, P.98, Q.274, Y.275, P.276 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.96, A:Y.275 Water bridges: A:Q.274 GOL.2: 3 residues within 4Å: Chain A: R.264, Y.265, D.305 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.265 Water bridges: A:D.305, A:D.305 GOL.3: 6 residues within 4Å: Chain A: S.107, Q.111, T.144, V.145, A.269, D.270 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.107, A:S.107 Water bridges: A:Q.111, A:Q.111

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 6 residues within 4Å: Chain A: P.231, K.232, P.233, F.298, Y.299, W.302 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:W.302

1 x URW: 2-[[5-[[2-[bis(fluoranyl)methoxy]phenyl]methyl-[(2~{R})-1-(methylamino)-1-oxidanylidene-propan-2-yl]carbamoyl]-1~{H}-imidazol-2-yl]carbonyl]isoindole-5-carboxamide(Non-covalent)

URW.5: 20 residues within 4Å: Chain A: V.17, G.18, R.19, G.20, V.25, A.36, K.38, V.65, M.79, E.80, Y.81, A.82, G.84, G.85, S.86, N.89, P.135, L.138, C.149, D.150 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.17, A:V.25, A:V.25, A:V.65 Hydrogen bonds: A:A.82, A:A.82, A:S.86, A:N.89, A:D.150, A:D.150 Water bridges: A:V.17, A:A.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Veerman, J.J.N. et al., Discovery of 2,4-1 H -Imidazole Carboxamides as Potent and Selective TAK1 Inhibitors. Acs Med.Chem.Lett. (2021)

Release Date

2021-04-07

Peptides

Mitogen-activated protein kinase kinase kinase 7,TGF-beta-activated kinase 1 and MAP3K7-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase kinase kinase 7,TGF-beta-activated kinase 1 and MAP3K7-binding protein 1

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