SMTL ID : 7nv0.1

Human Pol Kappa holoenzyme with wt PCNA

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-3-mer

Ligands

1 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)

TTP.1: 13 residues within 4Å: Chain A: D.107, M.108, D.109, A.110, F.111, Y.112, S.137, T.138, Y.141, R.144, D.198 Chain E: C.25 Chain F: A.13 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.112, A:S.137 Hydrogen bonds: A:A.110, A:F.111, A:Y.112, A:T.138, A:D.198 Salt bridges: A:R.144, A:R.144, A:K.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lancey, C. et al., Cryo-EM structure of human Pol kappa bound to DNA and mono-ubiquitylated PCNA. Nat Commun (2021)

Release Date

2021-11-10

Peptides

DNA polymerase kappa: A
Proliferating cell nuclear antigen: BCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

DNA polymerase kappa

Proliferating cell nuclear antigen

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