SMTL ID : 7nv1.1

Human Pol Kappa holoenzyme with Ub-PCNA

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-1-mer

Ligands

1 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)

TTP.1: 13 residues within 4Å: Chain D: D.107, M.108, D.109, A.110, F.111, Y.112, S.137, T.138, Y.141, R.144, D.198 Chain E: C.25 Chain F: A.13 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:Y.112, D:S.137 Hydrogen bonds: D:A.110, D:F.111, D:Y.112, D:T.138, D:D.198 Salt bridges: D:R.144, D:R.144, D:K.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lancey, C. et al., Cryo-EM structure of human Pol kappa bound to DNA and mono-ubiquitylated PCNA. Nat Commun (2021)

Release Date

2021-11-03

Peptides

Proliferating cell nuclear antigen: ABC
DNA polymerase kappa: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

D
A

Proliferating cell nuclear antigen

DNA polymerase kappa

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