SMTL ID : 7o4v.1

Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with oxidized nicotinamide adenine dinucleotide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 17 residues within 4Å: Chain A: G.348, A.349, G.350, M.351, M.352, D.371, V.372, A.427, V.428, F.429, E.430, L.434, K.435, V.438, N.455, S.457, H.478 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.348, A:A.349, A:A.349, A:G.350, A:M.351, A:M.352, A:V.372, A:V.428, A:F.429, A:E.430, A:E.430, A:K.435, A:N.455, A:S.457 NAD.22: 19 residues within 4Å: Chain D: A.349, G.350, M.351, M.352, G.353, D.371, V.372, A.427, V.428, E.430, L.434, K.435, V.438, N.455, T.456, S.457, H.478, F.479, S.481 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:A.349, D:G.350, D:M.351, D:M.352, D:G.353, D:V.428, D:E.430, D:K.435, D:N.455, D:S.457

25 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: H.8, H.9, H.10 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: S.674, T.675, A.676 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: G.41, S.42, T.43 Ligand excluded by PLIP SO4.6: 1 residues within 4Å: Chain B: R.382 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain B: H.24 Chain D: Q.289, V.290, D.291 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain B: N.380, R.382, R.402 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: S.163, R.164, N.249 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain A: P.646, P.647, L.648 Chain B: H.243 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain B: R.195, L.201 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain B: P.193, R.195 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: K.177, D.345, E.346 Ligand excluded by PLIP SO4.14: 1 residues within 4Å: Chain C: R.382 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain C: N.380, R.382, R.402 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain A: Q.289, V.290, D.291 Chain C: H.24 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain C: P.193, R.195 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain C: S.163, R.164, N.249 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain C: R.195, L.201 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain C: R.173, K.177, D.345, E.346 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain C: T.317, V.318 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain D: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain C: H.243 Chain D: P.646, P.647, L.648 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain D: R.718, L.735, S.736 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain D: R.614, R.628 Ligand excluded by PLIP SO4.27: 4 residues within 4Å: Chain D: H.7, H.8, H.9, H.10 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dalwani, S. et al., Substrate specificity and conformational flexibility properties of the Mycobacterium tuberculosis beta-oxidation trifunctional enzyme. J.Struct.Biol. (2021)

Release Date

2021-08-25

Peptides

3-hydroxyacyl-CoA dehydrogenase: AD
Putative acyltransferase Rv0859: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

D
A

B
D

C
C

3-hydroxyacyl-CoA dehydrogenase

Putative acyltransferase Rv0859

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