- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 34 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 3 residues within 4Å:- Chain A: G.725, D.726, R.727
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.726, A:R.727, A:R.727
GOL.9: 6 residues within 4Å:- Chain A: M.89, E.135, E.157, G.165, F.303
- Ligands: A9J.10
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.157, A:E.157, A:G.165
GOL.55: 9 residues within 4Å:- Chain C: I.36, L.39, R.40, H.43, L.46, E.48, I.51, M.79
- Ligands: A9J.56
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.43
GOL.65: 9 residues within 4Å:- Chain D: L.39, R.40, H.43, L.46, E.48, I.51, L.115, M.268
- Ligands: A9J.67
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:H.43, D:E.48
- 6 x ARF: FORMAMIDE(Non-covalent)
ARF.7: 6 residues within 4Å:- Chain A: G.84, D.85, V.86, K.87, F.320
- Ligands: A9J.11
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.84, A:V.86, A:K.87
ARF.8: 4 residues within 4Å:- Chain A: V.183, F.261, N.264
- Ligands: A9J.15
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:F.261
ARF.20: 3 residues within 4Å:- Chain A: D.96, D.99
- Ligands: A9J.10
No protein-ligand interaction detected (PLIP)ARF.30: 6 residues within 4Å:- Chain B: G.84, D.85, V.86, K.87, F.320
- Ligands: A9J.40
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.85, B:D.85, B:K.87
ARF.41: 4 residues within 4Å:- Chain B: V.183, F.261, N.264
- Ligands: A9J.37
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:F.261
ARF.42: 4 residues within 4Å:- Chain B: T.88, D.99, V.100
- Ligands: A9J.31
No protein-ligand interaction detected (PLIP)- 25 x A9J: Hexafluorophosphate anion(Non-covalent)
A9J.10: 7 residues within 4Å:- Chain A: T.88, M.89, V.100, T.103, V.307
- Ligands: GOL.9, ARF.20
No protein-ligand interaction detected (PLIP)A9J.11: 5 residues within 4Å:- Chain A: V.45, N.47, D.85, K.87
- Ligands: ARF.7
No protein-ligand interaction detected (PLIP)A9J.12: 4 residues within 4Å:- Chain A: V.158, T.159, M.274, M.315
No protein-ligand interaction detected (PLIP)A9J.13: 7 residues within 4Å:- Chain A: V.483, D.484, K.485, M.486, P.487, G.513, K.514
No protein-ligand interaction detected (PLIP)A9J.14: 6 residues within 4Å:- Chain A: G.83, G.84, G.131, P.156, E.157, L.160
No protein-ligand interaction detected (PLIP)A9J.15: 6 residues within 4Å:- Chain A: F.182, A.187, Q.188, L.265, Q.268
- Ligands: ARF.8
No protein-ligand interaction detected (PLIP)A9J.16: 7 residues within 4Å:- Chain A: S.457, H.478, F.480, T.527, S.528, I.531, L.571
No protein-ligand interaction detected (PLIP)A9J.17: 7 residues within 4Å:- Chain A: L.347, G.348, K.370, D.371, V.372, V.428, V.438
No protein-ligand interaction detected (PLIP)A9J.18: 4 residues within 4Å:- Chain A: D.147, L.206, V.207, A.208
No protein-ligand interaction detected (PLIP)A9J.19: 4 residues within 4Å:- Chain A: F.319, P.487, I.683, M.684
No protein-ligand interaction detected (PLIP)A9J.31: 6 residues within 4Å:- Chain B: T.88, M.89, V.100, T.103, F.303
- Ligands: ARF.42
No protein-ligand interaction detected (PLIP)A9J.32: 6 residues within 4Å:- Chain B: D.484, K.485, M.486, P.487, G.513, K.514
No protein-ligand interaction detected (PLIP)A9J.33: 8 residues within 4Å:- Chain B: L.347, G.348, K.370, D.371, V.372, V.428, V.438, E.441
No protein-ligand interaction detected (PLIP)A9J.34: 4 residues within 4Å:- Chain B: D.147, L.206, V.207, A.208
No protein-ligand interaction detected (PLIP)A9J.35: 5 residues within 4Å:- Chain B: V.158, T.159, A.187, Q.188, M.274
No protein-ligand interaction detected (PLIP)A9J.36: 6 residues within 4Å:- Chain B: G.83, G.84, G.131, P.156, E.157, L.160
No protein-ligand interaction detected (PLIP)A9J.37: 6 residues within 4Å:- Chain B: F.182, A.187, Q.188, L.265, Q.268
- Ligands: ARF.41
No protein-ligand interaction detected (PLIP)A9J.38: 4 residues within 4Å:- Chain B: F.319, P.487, I.683, M.684
No protein-ligand interaction detected (PLIP)A9J.39: 6 residues within 4Å:- Chain B: H.478, F.480, T.527, S.528, I.531, L.571
No protein-ligand interaction detected (PLIP)A9J.40: 4 residues within 4Å:- Chain B: V.45, N.47, D.85
- Ligands: ARF.30
No protein-ligand interaction detected (PLIP)A9J.56: 8 residues within 4Å:- Chain C: Y.8, E.9, L.39, H.43, L.46, M.268, L.280
- Ligands: GOL.55
No protein-ligand interaction detected (PLIP)A9J.57: 7 residues within 4Å:- Chain C: F.91, M.134, G.392
- Chain D: G.67, R.71, A.72, L.75
No protein-ligand interaction detected (PLIP)A9J.66: 6 residues within 4Å:- Chain C: R.71, A.72, L.75
- Chain D: F.91, M.134, G.392
No protein-ligand interaction detected (PLIP)A9J.67: 8 residues within 4Å:- Chain D: Y.8, E.9, L.39, H.43, L.46, M.268, L.280
- Ligands: GOL.65
No protein-ligand interaction detected (PLIP)A9J.68: 3 residues within 4Å:- Chain D: A.272, A.273, K.276
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dalwani, S. et al., Crystallographic fragment binding studies of the Mycobacterium tuberculosis trifunctional enzyme suggest binding pockets for the tails of the acyl-CoA substrates at its active sites and a potential substrate channeling path between them. Biorxiv (2024)
- Release Date
- 2024-01-24
- Peptides
- 3-hydroxyacyl-CoA dehydrogenase: AB
Putative acyltransferase Rv0859: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 34 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 6 x ARF: FORMAMIDE(Non-covalent)
- 25 x A9J: Hexafluorophosphate anion(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dalwani, S. et al., Crystallographic fragment binding studies of the Mycobacterium tuberculosis trifunctional enzyme suggest binding pockets for the tails of the acyl-CoA substrates at its active sites and a potential substrate channeling path between them. Biorxiv (2024)
- Release Date
- 2024-01-24
- Peptides
- 3-hydroxyacyl-CoA dehydrogenase: AB
Putative acyltransferase Rv0859: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D