SMTL ID : 7ofi.1

Ligand complex of RORg LBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x VCK: (2~{R})-2-(4-ethylsulfonylphenyl)-~{N}-[4-[1,1,1,3,3,3-hexakis(fluoranyl)-2-oxidanyl-propan-2-yl]phenyl]-~{N}'-methyl-butanediamide(Non-covalent)

VCK.1: 19 residues within 4Å: Chain A: C.42, Q.43, L.44, L.49, C.77, H.80, L.81, R.121, M.122, R.124, A.125, F.134, F.135, E.136, F.145, L.148, I.154, I.157 Ligands: DMS.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Q.43, A:L.44, A:H.80, A:R.121, A:A.125, A:F.134 Hydrogen bonds: A:F.134, A:E.136 Water bridges: A:H.80, A:G.137 pi-Stacking: A:F.135 Halogen bonds: A:C.77

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: R.53, C.123, Y.126, S.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.53, A:S.165

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 8 residues within 4Å: Chain A: W.74, C.77, L.81, C.150, L.153, H.236, Y.259 Ligands: VCK.1 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:W.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Narjes, F. et al., AZD0284, a Potent, Selective, and Orally Bioavailable Inverse Agonist of Retinoic Acid Receptor-Related Orphan Receptor C2. J.Med.Chem. (2021)

Release Date

2022-03-16

Peptides

Nuclear receptor ROR-gamma: A
Nuclear receptor coactivator 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Nuclear receptor ROR-gamma

Nuclear receptor coactivator 2

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