SMTL ID : 7ofk.1

Ligand complex of RORg LBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

hetero-1-1-mer

Ligands

1 x VCH: (1~{R})-2-ethanoyl-~{N}-[4-[1,1,1,3,3,3-hexakis(fluoranyl)-2-oxidanyl-propan-2-yl]phenyl]-5-methylsulfonyl-1,3-dihydroisoindole-1-carboxamide(Non-covalent)

VCH.1: 19 residues within 4Å: Chain A: C.42, Q.43, L.44, L.49, C.77, H.80, L.81, R.121, M.122, R.124, A.125, F.134, F.135, E.136, F.145, L.148, I.154, I.157 Ligands: DMS.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.44, A:H.80, A:A.125, A:F.134 Hydrogen bonds: A:F.134, A:E.136 pi-Stacking: A:F.135 Halogen bonds: A:C.77

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 6 residues within 4Å: Chain A: W.74, L.81, L.153, H.236, Y.259 Ligands: VCH.1 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:W.74 DMS.3: 3 residues within 4Å: Chain A: Q.32, C.35, D.172 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.39, A:R.39 Salt bridges: A:D.172

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: R.53, C.123, Y.126, S.165 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.53, A:C.123 Water bridges: A:S.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Narjes, F. et al., AZD0284, a Potent, Selective, and Orally Bioavailable Inverse Agonist of Retinoic Acid Receptor-Related Orphan Receptor C2. J.Med.Chem. (2021)

Release Date

2022-03-16

Peptides

Nuclear receptor ROR-gamma: A
Nuclear receptor coactivator 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Nuclear receptor ROR-gamma

Nuclear receptor coactivator 2

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