SMTL ID : 7okt.1 (1 other biounit)

X-ray structure of soluble EPCR in C2221 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: L.16, I.18, Q.30, N.32, L.39 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.39 Hydrogen bonds: A:Q.30 Water bridges: A:Q.30 NAG.2: 3 residues within 4Å: Chain A: A.92, P.94, N.121 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.92, A:A.92 Water bridges: A:T.96, A:N.121, A:N.121 NAG.4: 2 residues within 4Å: Chain A: N.49 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Water bridges: A:T.48, A:T.48, A:N.49

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: N.49 Ligands: NAG.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.49 Water bridges: A:N.49

1 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.5: 18 residues within 4Å: Chain A: M.15, L.16, N.32, H.41, L.43, G.70, L.71, Y.74, F.78, L.81, L.101, V.118, F.125, W.135, T.149, R.158, F.166, T.170 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.43, A:Y.74, A:Y.74, A:Y.74, A:F.78, A:L.81, A:L.101, A:V.118, A:F.125, A:W.135, A:F.166, A:F.166 Hydrogen bonds: A:T.170, A:T.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Erausquin, E. et al., Identification of a broad lipid repertoire associated to the endothelial cell protein C receptor (EPCR). Sci Rep (2022)

Release Date

2022-04-27

Peptides

Endothelial protein C receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endothelial protein C receptor

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