SMTL ID : 7okt.2 (1 other biounit)

X-ray structure of soluble EPCR in C2221 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 3 residues within 4Å: Chain A: P.46, N.49, T.51 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.46 Hydrogen bonds: A:N.49

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: A.92, P.94, L.95, N.121 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.92, A:A.92 Water bridges: A:F.93 NAG.3: 4 residues within 4Å: Chain A: Q.30, G.31, N.32, L.39 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.39 Hydrogen bonds: A:N.32 Water bridges: A:G.31, A:N.32

1 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.4: 24 residues within 4Å: Chain A: L.13, M.15, L.16, Q.17, N.32, A.33, H.41, I.52, G.70, L.71, Y.74, F.78, V.82, F.116, V.118, F.125, L.153, R.158, E.162, L.163, F.166, T.170, C.171, Y.174 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:L.13, A:M.15, A:Q.17, A:A.33, A:H.41, A:I.52, A:L.71, A:Y.74, A:Y.74, A:Y.74, A:Y.74, A:Y.74, A:F.78, A:V.82, A:F.116, A:V.118, A:F.125, A:L.153, A:L.163, A:F.166, A:F.166, A:T.170, A:Y.174, A:Y.174 Hydrogen bonds: A:T.170, A:T.170 Water bridges: A:F.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Erausquin, E. et al., Identification of a broad lipid repertoire associated to the endothelial cell protein C receptor (EPCR). Sci Rep (2022)

Release Date

2022-04-27

Peptides

Endothelial protein C receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Endothelial protein C receptor

Related Entries With Identical Sequence