SMTL ID : 7okv.1

Crystal structure of soluble EPCR after exposure to the nonionic surfactant Polysorbate 20

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 7 residues within 4Å: Chain A: H.14, M.15, L.16, N.32, A.33, S.34, L.39 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.14 Hydrogen bonds: A:N.32 NAG.3: 3 residues within 4Å: Chain A: A.92, P.94, N.121 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.92, A:A.92, A:N.121 NAG.6: 2 residues within 4Å: Chain A: N.49, T.51 No protein-ligand interaction detected (PLIP)

1 x R16: HEXADECANE(Non-covalent)

R16.2: 8 residues within 4Å: Chain A: Y.74, Q.77, F.78, L.81, V.85, F.125, L.153, T.159 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.74, A:Q.77, A:F.78, A:L.81, A:V.85, A:F.125, A:L.153, A:T.159

1 x HEX: HEXANE(Non-covalent)

HEX.4: 5 residues within 4Å: Chain A: L.13, H.41, L.71, Y.174 Ligands: D10.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.13, A:H.41, A:L.71, A:Y.174, A:Y.174

1 x D10: DECANE(Non-covalent)

D10.5: 9 residues within 4Å: Chain A: M.15, L.16, Q.17, H.41, L.43, Y.74, L.101, F.166 Ligands: HEX.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:M.15, A:Q.17, A:H.41, A:L.43, A:Y.74, A:Y.74, A:F.166

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 2 residues within 4Å: Chain A: Y.161, R.164 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.161, A:R.164, A:E.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Erausquin, E. et al., Identification of a broad lipid repertoire associated to the endothelial cell protein C receptor (EPCR). Sci Rep (2022)

Release Date

2022-07-06

Peptides

Endothelial protein C receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endothelial protein C receptor

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