SMTL ID : 7oov.1

Crystal structure of PIM1 in complex with ARC-1411

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.259, S.262 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.262 Water bridges: A:S.262 Salt bridges: A:R.259

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: V.53, K.68, I.105, L.121, I.186, D.187 Chain B: X.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.187 Water bridges: A:K.68 EDO.3: 5 residues within 4Å: Chain A: Q.286, N.287, H.288, M.291, Q.292 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.288 Water bridges: A:D.293 EDO.4: 5 residues within 4Å: Chain A: R.137, A.139, L.140, Q.141, L.144 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.137, A:R.137, A:Q.141 EDO.5: 3 residues within 4Å: Chain A: A.139, Q.141, Q.258 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.139 EDO.6: 4 residues within 4Å: Chain A: E.263, H.266, H.288, P.289 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.288 EDO.7: 2 residues within 4Å: Chain A: H.266, W.270 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nonga, O.E. et al., Crystal Structure-Guided Design of Bisubstrate Inhibitors and Photoluminescent Probes for Protein Kinases of the PIM Family. Molecules (2021)

Release Date

2021-08-04

Peptides

Serine/threonine-protein kinase pim-1: A
Inhibitor ARC-1411: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine/threonine-protein kinase pim-1

Inhibitor ARC-1411

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