SMTL ID : 7ox8.1

Target-bound SpCas9 complex with TRAC full RNA guide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Chain A: U.24 No protein-ligand interaction detected (PLIP) MG.2: 1 residues within 4Å: Chain A: U.52 No protein-ligand interaction detected (PLIP)

12 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)

K.3: 3 residues within 4Å: Chain A: A.67, U.68 Chain B: T.1106 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.1106, H2O.5 K.4: 1 residues within 4Å: Chain A: G.23 No protein-ligand interaction detected (PLIP) K.5: 2 residues within 4Å: Chain A: A.70 Chain B: Q.1354 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:Q.1354, H2O.1, H2O.3 K.6: 1 residues within 4Å: Chain A: U.68 No protein-ligand interaction detected (PLIP) K.7: 1 residues within 4Å: Chain A: U.7 No protein-ligand interaction detected (PLIP) K.8: 1 residues within 4Å: Chain A: G.29 No protein-ligand interaction detected (PLIP) K.9: 4 residues within 4Å: Chain B: L.627, T.628, F.630, Y.660 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.628, B:F.630, B:Y.660, H2O.5 K.10: 5 residues within 4Å: Chain B: G.365, Y.366, G.369, G.370, A.371 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:Y.366, B:G.369, B:A.371 K.11: 2 residues within 4Å: Chain B: A.644, F.647 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:A.644, B:F.647 K.12: 5 residues within 4Å: Chain B: I.230, L.233, P.234, G.235, E.236 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:L.233, H2O.5 K.13: 2 residues within 4Å: Chain B: E.112, K.115 No protein-ligand interaction detected (PLIP) K.14: 3 residues within 4Å: Chain B: E.588, R.590, N.592 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.588, B:R.590, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Donohoue, P.D. et al., Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells. Mol.Cell (2021)

Release Date

2021-09-15

Peptides

CRISPR-associated endonuclease Cas9/Csn1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

CRISPR-associated endonuclease Cas9/Csn1

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