SMTL ID : 7pc7.1 (1 other biounit)

The PDZ domain of SNTG1 complexed with the acetylated PDZ-binding motif of PTEN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: G.125, V.126, E.128 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:G.125, A:V.126, A:E.128 CA.2: 3 residues within 4Å: Chain A: K.163, L.166, E.171 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:K.163, A:L.166, A:E.171 CA.3: 4 residues within 4Å: Chain A: M.193, G.195, G.197, D.237 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:M.193, A:G.195, A:G.197, H2O.3, H2O.9 CA.4: 4 residues within 4Å: Chain A: G.277, R.280, G.282, E.322 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.277, A:R.280, A:G.282, A:E.322, H2O.9 CA.5: 4 residues within 4Å: Chain A: M.353, G.355, G.357, D.397 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:M.353, A:G.355, A:G.357, A:D.397, A:D.397 CA.8: 2 residues within 4Å: Chain A: T.198, E.200 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.198, A:E.200, H2O.5, H2O.9, H2O.9

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: P.181, D.185, R.210, E.214, S.369, R.370, V.373 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.370, A:R.370 Water bridges: A:P.181, A:D.185 GOL.7: 9 residues within 4Å: Chain A: C.208, S.209, R.210, T.211, R.254, V.297, L.334, C.337, K.341 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:C.208, A:R.254, A:K.341 Water bridges: A:N.212, A:N.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cousido-Siah, A. et al., A scalable strategy to solve structures of PDZ domains and their complexes. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-04-20

Peptides

Gamma-1-syntrophin,Annexin A2: A
Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Gamma-1-syntrophin,Annexin A2

Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN

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