SMTL ID : 7pc8.1 (1 other biounit)

The PDZ domain of SNTG1 complexed with the phosphomimetic mutant PDZ-binding motif of RSK1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: G.125, V.126, E.128 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:G.125 CA.2: 4 residues within 4Å: Chain A: K.163, L.166, S.167, E.171 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:L.166, A:E.171 CA.3: 6 residues within 4Å: Chain A: M.193, G.195, L.196, G.197, T.198, D.237 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:G.195, A:G.197, A:D.237 CA.4: 5 residues within 4Å: Chain A: G.277, R.280, K.281, G.282, E.322 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.277, A:G.282, A:E.322, A:E.322, H2O.5 CA.5: 4 residues within 4Å: Chain A: M.353, G.355, G.357, D.397 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:M.353, A:G.355, A:G.357, A:D.397, A:D.397

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: C.208, S.209, R.210, R.254, V.297, L.334, C.337, K.341 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.254, A:R.254, A:K.341 Water bridges: A:N.212 GOL.7: 7 residues within 4Å: Chain A: E.256, D.257, G.258, D.262, R.295, S.296, H.299 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.256, A:G.258, A:S.296, A:S.296 Water bridges: A:D.262, A:D.262 GOL.8: 6 residues within 4Å: Chain A: P.181, D.185, R.210, E.214, S.369, R.370 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.185, A:S.369, A:R.370, A:R.370 Water bridges: A:D.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cousido-Siah, A. et al., A scalable strategy to solve structures of PDZ domains and their complexes. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-04-20

Peptides

Gamma-1-syntrophin,Annexin A2: A
Ribosomal protein S6 kinase alpha-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Gamma-1-syntrophin,Annexin A2

Ribosomal protein S6 kinase alpha-1

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