SMTL ID : 7qqn.2 (1 other biounit)

The PDZ domain of SNTG1 complexed with the acetylated PDZ-binding motif of TRPV3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-mer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: G.125, V.126, E.128 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:G.125, A:V.126, A:E.128 CA.2: 3 residues within 4Å: Chain A: L.166, S.167, E.171 No protein-ligand interaction detected (PLIP) CA.3: 5 residues within 4Å: Chain A: M.193, G.195, L.196, G.197, D.237 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.237, H2O.2 CA.4: 5 residues within 4Å: Chain A: G.277, R.280, K.281, G.282, E.322 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:R.280, A:G.282, A:E.322, H2O.1, H2O.4 CA.5: 4 residues within 4Å: Chain A: M.353, G.355, G.357, D.397 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:M.353, A:G.355, A:G.357, A:D.397, A:D.397

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: C.208, R.210, T.211, N.212, R.254, C.337, K.341 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.212, A:R.254, A:R.254 Water bridges: A:N.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cousido-Siah, A. et al., A scalable strategy to solve structures of PDZ domains and their complexes. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-04-20

Peptides

Gamma-1-syntrophin,Annexin A2: A
Transient receptor potential cation channel subfamily V member 3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Gamma-1-syntrophin,Annexin A2

Transient receptor potential cation channel subfamily V member 3

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