SMTL ID : 7pd7.1 (3 other biounits)

Crocagin methyl transferase CgnL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 12 residues within 4Å: Chain A: Y.18, D.19, F.27, H.31, C.52, G.53, T.54, G.55, A.56, L.57, R.84 Ligands: SAH.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.19, A:D.19, A:H.31, A:T.54, A:A.56, A:R.84 Water bridges: A:D.49, A:L.57 GOL.2: 7 residues within 4Å: Chain A: L.41, G.42, T.43, P.44, C.45, D.105, R.135 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.41, A:L.41, A:R.135, A:R.135 GOL.4: 5 residues within 4Å: Chain A: P.160, G.161, P.162, N.163, G.164 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.161, A:G.164

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Covalent)

SAH.3: 23 residues within 4Å: Chain A: G.5, G.6, F.11, Y.18, F.27, V.50, G.51, C.52, G.53, I.71, D.72, A.73, S.74, M.77, R.93, R.94, M.95, E.96, L.110, C.111, T.113, Y.116 Ligands: GOL.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.18 Hydrogen bonds: A:G.53, A:D.72, A:D.72, A:A.73, A:S.74, A:M.95, A:E.96 Water bridges: A:G.5, A:L.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adam, S. et al., Unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesis. Nat.Chem. (2023)

Release Date

2022-08-17

Peptides

Methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methyltransferase

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