- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-6-mer
- Ligands
- 5 x HYP- ALA- TRP- EEP- ALA- DTH- CYS: Phalloidin(Non-covalent)
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)
ADP.6: 17 residues within 4Å:- Chain C: D.11, G.13, S.14, G.15, M.16, K.18, G.156, D.157, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306
- Ligands: MG.7
14 PLIP interactions:14 interactions with chain C- Hydrogen bonds: C:D.11, C:G.13, C:S.14, C:G.15, C:M.16, C:D.157, C:D.157, C:K.213, C:E.214, C:E.214, C:G.302
- Salt bridges: C:K.18, C:K.18
- pi-Stacking: C:Y.306
ADP.8: 17 residues within 4Å:- Chain D: G.13, S.14, G.15, M.16, K.18, G.156, D.157, G.182, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336
- Ligands: MG.9
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:S.14, D:G.15, D:M.16, D:D.157, D:D.157, D:K.213, D:G.302
- Salt bridges: D:K.18, D:K.18
- pi-Stacking: D:Y.306
ADP.11: 17 residues within 4Å:- Chain E: G.13, S.14, M.16, K.18, G.156, D.157, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336
- Ligands: PO4.10, MG.12
10 PLIP interactions:10 interactions with chain E- Hydrogen bonds: E:G.15, E:D.157, E:D.157, E:K.213, E:E.214, E:G.302, E:M.305, E:K.336
- Salt bridges: E:K.18
- pi-Stacking: E:Y.306
ADP.13: 19 residues within 4Å:- Chain F: D.11, G.13, S.14, G.15, M.16, K.18, G.156, D.157, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336
- Ligands: MG.14, PO4.15
12 PLIP interactions:12 interactions with chain F- Hydrogen bonds: F:S.14, F:G.15, F:M.16, F:D.157, F:D.157, F:K.213, F:E.214, F:G.302, F:K.336
- Salt bridges: F:K.18, F:K.18
- pi-Stacking: F:Y.306
ADP.16: 18 residues within 4Å:- Chain G: D.11, G.13, S.14, G.15, M.16, K.18, G.156, D.157, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336
- Ligands: MG.17, PO4.18
10 PLIP interactions:10 interactions with chain G- Hydrogen bonds: G:G.13, G:G.15, G:M.16, G:D.157, G:K.213, G:G.302, G:K.336
- Salt bridges: G:K.18, G:K.18
- pi-Stacking: G:Y.306
ADP.19: 18 residues within 4Å:- Chain H: G.13, S.14, G.15, M.16, K.18, G.156, D.157, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336
- Ligands: MG.20, PO4.21
13 PLIP interactions:13 interactions with chain H- Hydrogen bonds: H:S.14, H:G.15, H:M.16, H:D.157, H:D.157, H:K.213, H:E.214, H:E.214, H:G.302, H:M.305
- Salt bridges: H:K.18, H:K.18
- pi-Stacking: H:Y.306
- 6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.7: 2 residues within 4Å:- Chain C: D.11
- Ligands: ADP.6
No protein-ligand interaction detected (PLIP)MG.9: 1 residues within 4Å:- Ligands: ADP.8
No protein-ligand interaction detected (PLIP)MG.12: 3 residues within 4Å:- Chain E: Q.137
- Ligands: PO4.10, ADP.11
No protein-ligand interaction detected (PLIP)MG.14: 2 residues within 4Å:- Ligands: ADP.13, PO4.15
No protein-ligand interaction detected (PLIP)MG.17: 4 residues within 4Å:- Chain G: G.13, Q.137
- Ligands: ADP.16, PO4.18
No protein-ligand interaction detected (PLIP)MG.20: 4 residues within 4Å:- Chain H: G.13, Q.137
- Ligands: ADP.19, PO4.21
No protein-ligand interaction detected (PLIP)- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.10: 7 residues within 4Å:- Chain E: G.13, S.14, Q.137, G.158, V.159
- Ligands: ADP.11, MG.12
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:S.14, E:Q.137, E:G.158, E:V.159
PO4.15: 8 residues within 4Å:- Chain F: G.13, S.14, G.156, D.157, G.158, V.159
- Ligands: ADP.13, MG.14
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:S.14, F:S.14, F:G.156, F:G.158, F:V.159
PO4.18: 9 residues within 4Å:- Chain G: G.13, S.14, Q.137, G.156, D.157, G.158, V.159
- Ligands: ADP.16, MG.17
8 PLIP interactions:8 interactions with chain G- Hydrogen bonds: G:S.14, G:S.14, G:S.14, G:Q.137, G:G.156, G:D.157, G:G.158, G:V.159
PO4.21: 9 residues within 4Å:- Chain H: G.13, S.14, Q.137, G.156, D.157, G.158, V.159
- Ligands: ADP.19, MG.20
5 PLIP interactions:5 interactions with chain H- Hydrogen bonds: H:S.14, H:G.156, H:G.156, H:G.158, H:V.159
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Funk, J. et al., A barbed end interference mechanism reveals how capping protein promotes nucleation in branched actin networks. Nat Commun (2021)
- Release Date
- 2021-09-01
- Peptides
- Isoform 2 of F-actin-capping protein subunit beta: A
F-actin-capping protein subunit alpha-1: B
Actin, cytoplasmic 1: CDEFGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
ID
JE
KF
LG
NH
O
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-6-mer
- Ligands
- 5 x HYP- ALA- TRP- EEP- ALA- DTH- CYS: Phalloidin(Non-covalent)
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Funk, J. et al., A barbed end interference mechanism reveals how capping protein promotes nucleation in branched actin networks. Nat Commun (2021)
- Release Date
- 2021-09-01
- Peptides
- Isoform 2 of F-actin-capping protein subunit beta: A
F-actin-capping protein subunit alpha-1: B
Actin, cytoplasmic 1: CDEFGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
ID
JE
KF
LG
NH
O