SMTL ID : 7po7.1 (3 other biounits)

Phosphoglycolate phosphatase from Mus musculus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: R.210, F.211 Chain B: L.157, R.186, Q.189 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.211 ACT.4: 6 residues within 4Å: Chain A: L.157, V.185, R.186, Q.189 Chain B: R.210, F.211 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:R.186 Water bridges: A:Q.189, B:G.209 Hydrogen bonds: B:F.211

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.15, R.20 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.15 Salt bridges: A:R.20 SO4.6: 2 residues within 4Å: Chain B: R.15, R.20 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.15, B:R.20

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain B: C.35, D.36, W.40, T.67, N.69, K.72, Y.77, K.80 Ligands: GOL.5 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:W.40, B:T.67, B:T.67, B:K.72, B:Y.77, B:K.80 GOL.5: 8 residues within 4Å: Chain A: P.153, W.156 Chain B: N.69, S.70, S.71, F.172, L.204 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.69, B:S.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schloetzer, J. et al., Discovery of a small-molecule inhibitor of the metabolic damage control enzyme phosphoglycolate phosphatase. To Be Published

Release Date

2022-12-21

Peptides

Glycerol-3-phosphate phosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycerol-3-phosphate phosphatase

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