SMTL ID : 7po7.4 (3 other biounits)

Phosphoglycolate phosphatase from Mus musculus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: R.210, F.211 Chain B: L.157, V.185, R.186, Q.189 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.211 ACT.3: 5 residues within 4Å: Chain A: L.157, R.186, Q.189 Chain B: R.210, F.211 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.211

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: T.67, N.68, N.69, K.72, Y.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.77 GOL.4: 4 residues within 4Å: Chain B: R.15, S.17, A.18, E.19 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.15, B:A.18 GOL.5: 5 residues within 4Å: Chain B: T.75, A.78, E.79, R.82, L.96 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.79, B:E.79, B:R.82 GOL.6: 9 residues within 4Å: Chain B: C.35, D.36, W.40, E.43, T.67, N.69, K.72, Y.77, K.80 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:W.40, B:T.67, B:T.67, B:K.80 Water bridges: B:D.36 GOL.7: 5 residues within 4Å: Chain B: R.238, F.241, I.250, P.252, C.272 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.238

1 x CA: CALCIUM ION(Non-covalent)

CA.8: 8 residues within 4Å: Chain B: N.68, N.69, S.70, T.101, F.172, T.198, N.199, T.215 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:S.70

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 2 residues within 4Å: Chain B: R.15, R.20 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.15, B:R.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeanclos, E. et al., Glycolytic flux control by drugging phosphoglycolate phosphatase. Nat Commun (2022)

Release Date

2022-12-21

Peptides

Glycerol-3-phosphate phosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Glycerol-3-phosphate phosphatase

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