SMTL ID : 7po7.2 (3 other biounits)

Phosphoglycolate phosphatase from Mus musculus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: C.35, D.36, W.40, T.67, N.69, K.72, Y.77, K.80 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.36, A:W.40, A:N.69, A:Y.77, A:K.80 GOL.3: 7 residues within 4Å: Chain A: R.220, E.223, M.224, Q.227, R.228, Q.229 Chain B: N.202 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.220, A:R.220 GOL.4: 4 residues within 4Å: Chain A: R.203, F.211 Chain B: Q.189, Q.227 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.189, B:Q.227, A:R.203, A:R.203 GOL.6: 10 residues within 4Å: Chain B: N.34, C.35, D.36, W.40, I.66, T.67, N.68, N.69, Y.77, K.235 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.34, B:C.35, B:D.36, B:N.68, B:Y.77, B:K.235 GOL.8: 9 residues within 4Å: Chain A: P.153, W.156 Chain B: N.69, S.71, K.72, F.172, L.204, L.206, I.212 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.69, B:S.71 Water bridges: B:N.69, B:S.70

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: R.210, F.211 Chain B: L.157, V.185, R.186, Q.189 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.211 ACT.7: 6 residues within 4Å: Chain A: L.157, V.185, R.186, Q.189 Chain B: R.210, F.211 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:R.186, A:Q.189 Hydrogen bonds: B:F.211 Salt bridges: B:R.210

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain A: R.15, R.20 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.15, A:R.20 SO4.9: 2 residues within 4Å: Chain B: R.15, R.20 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.15, B:R.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeanclos, E. et al., Glycolytic flux control by drugging phosphoglycolate phosphatase. Nat Commun (2022)

Release Date

2022-12-21

Peptides

Glycerol-3-phosphate phosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Glycerol-3-phosphate phosphatase

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