SMTL ID : 7q6r.2 (5 other biounits)

OleP mutant E89Y in complex with 6DEB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: V.84, L.85, H.92, R.96, F.103, I.148, A.235, G.236, T.239, Q.243, L.276, L.281, R.289, F.312, A.339, F.340, G.341, H.345, C.347, I.348, G.349, L.357 Ligands: DEB.2 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:F.103, A:I.148, A:T.239, A:Q.243, A:L.276, A:L.281, A:F.312, A:F.340, A:I.348, A:L.357 Salt bridges: A:H.92, A:R.96, A:R.289, A:H.345 Metal complexes: A:C.347

1 x DEB: 6-DEOXYERYTHRONOLIDE B(Non-covalent)

DEB.2: 14 residues within 4Å: Chain A: F.75, L.85, M.169, L.170, I.234, A.235, T.239, S.286, F.287, L.387, I.388 Ligands: HEM.1, GOL.3, FMT.9 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.75, A:L.85, A:L.170, A:A.235, A:T.239, A:L.387, A:I.388

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 10 residues within 4Å: Chain A: Y.80, G.83, M.169, Q.184, N.227, S.231, I.234 Ligands: DEB.2, FMT.9, FMT.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.184, A:N.227, A:N.227 GOL.4: 11 residues within 4Å: Chain A: L.56, G.57, D.58, S.59, F.61, T.63, Q.87, D.88, P.89, A.344, H.345 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.57, A:T.63, A:A.344 Water bridges: A:D.58, A:R.289, A:H.345 GOL.5: 5 residues within 4Å: Chain A: R.257, S.260, L.328, D.329, F.330 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.257, A:L.328, A:F.330

8 x FMT: FORMIC ACID(Non-functional Binders)

FMT.6: 4 residues within 4Å: Chain A: D.88, P.89, P.90, D.91 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.89, A:D.91, A:D.91 FMT.7: 4 residues within 4Å: Chain A: E.296, S.298, T.299, T.301 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.296, A:T.301, A:T.301 FMT.8: 4 residues within 4Å: Chain A: F.340, H.346, R.354 Ligands: FMT.11 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.346, A:R.354, A:R.354 Water bridges: A:H.337 FMT.9: 6 residues within 4Å: Chain A: Y.80, G.83, F.287 Ligands: DEB.2, GOL.3, FMT.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.80, A:Y.80 FMT.10: 8 residues within 4Å: Chain A: F.75, T.77, P.79, Y.80, M.169, Q.184 Ligands: GOL.3, FMT.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.80 FMT.11: 1 residues within 4Å: Ligands: FMT.8 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.351, A:Q.351 FMT.12: 1 residues within 4Å: Chain A: E.150 No protein-ligand interaction detected (PLIP) FMT.13: 6 residues within 4Å: Chain A: S.11, L.12, P.13, D.17, D.19, R.389 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.12, A:D.19, A:R.389

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montemiglio, L.C. et al., Point Mutations at a Key Site Alter the Cytochrome P450 OleP Structural Dynamics. Biomolecules (2021)

Release Date

2022-01-26

Peptides

Cytochrome P-450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cytochrome P-450

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