SMTL ID : 7q6r.3 (5 other biounits)

OleP mutant E89Y in complex with 6DEB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 21 residues within 4Å: Chain A: V.84, L.85, H.92, R.96, F.103, A.235, G.236, T.239, Q.243, L.281, R.289, F.312, A.339, F.340, G.341, H.345, C.347, I.348, G.349, L.357 Ligands: DEB.2 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:F.103, A:Q.243, A:L.281, A:F.312, A:F.340, A:I.348, A:L.357 Salt bridges: A:H.92, A:R.96, A:R.289, A:H.345 Metal complexes: A:C.347

1 x DEB: 6-DEOXYERYTHRONOLIDE B(Non-covalent)

DEB.2: 14 residues within 4Å: Chain A: M.74, F.75, L.85, M.169, L.170, I.234, A.235, T.239, S.286, F.287, L.387, I.388 Ligands: HEM.1, GOL.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:M.74, A:F.75, A:L.170, A:A.235, A:T.239, A:L.387, A:I.388

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: Y.80, G.83, M.169, Q.184, N.227, S.231, I.234 Ligands: DEB.2, FMT.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.184, A:N.227 Water bridges: A:S.231 GOL.4: 10 residues within 4Å: Chain A: L.56, D.58, S.59, F.61, T.63, Q.87, D.88, P.89, A.344, H.345 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.59, A:T.63, A:T.63, A:H.345 GOL.5: 3 residues within 4Å: Chain A: Q.87, D.91, E.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.87, A:Q.87, A:D.91

10 x FMT: FORMIC ACID(Non-functional Binders)

FMT.6: 7 residues within 4Å: Chain A: F.75, T.77, P.78, P.79, Y.80, Q.184 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.77, A:T.77, A:Y.80, A:Q.184 FMT.7: 2 residues within 4Å: Chain A: M.188, D.192 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.192 Water bridges: A:K.222 FMT.8: 1 residues within 4Å: Chain A: T.370 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.372 FMT.9: 2 residues within 4Å: Chain A: E.109, R.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.109, A:R.112 FMT.10: 2 residues within 4Å: Chain A: L.328, F.330 No protein-ligand interaction detected (PLIP) FMT.11: 3 residues within 4Å: Chain A: R.163, T.164, D.167 No protein-ligand interaction detected (PLIP) FMT.12: 2 residues within 4Å: Chain A: A.105, Q.351 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.351 FMT.13: 3 residues within 4Å: Chain A: F.340, H.346, R.354 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.346, A:R.354, A:R.354 FMT.14: 1 residues within 4Å: Chain A: E.259 No protein-ligand interaction detected (PLIP) FMT.15: 4 residues within 4Å: Chain A: F.103, H.346, C.347, I.348 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.103 Water bridges: A:R.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montemiglio, L.C. et al., Point Mutations at a Key Site Alter the Cytochrome P450 OleP Structural Dynamics. Biomolecules (2021)

Release Date

2022-01-26

Peptides

Cytochrome P-450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Cytochrome P-450

Related Entries With Identical Sequence