SMTL ID : 7q6r.4 (5 other biounits)

OleP mutant E89Y in complex with 6DEB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: V.84, L.85, H.92, R.96, F.103, A.235, G.236, T.239, Q.243, L.276, L.281, R.289, F.312, A.339, F.340, G.341, H.345, C.347, I.348, G.349, L.352, L.357 Ligands: DEB.2 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:L.85, A:F.103, A:Q.243, A:L.276, A:L.281, A:F.340, A:I.348, A:L.352, A:L.357 Salt bridges: A:H.92, A:R.96, A:R.289, A:H.345 Metal complexes: A:C.347

1 x DEB: 6-DEOXYERYTHRONOLIDE B(Non-covalent)

DEB.2: 13 residues within 4Å: Chain A: M.74, F.75, L.85, M.169, L.170, I.234, A.235, T.239, S.286, F.287, L.387 Ligands: HEM.1, GOL.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:M.74, A:F.75, A:L.170, A:A.235, A:T.239

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: Y.80, M.169, Q.184, N.227, S.231, I.234 Ligands: DEB.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.184, A:N.227 GOL.4: 4 residues within 4Å: Chain A: A.105, V.108, E.109, Q.351 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.109, A:Q.351

5 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 2 residues within 4Å: Chain A: V.127, R.367 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.367 Water bridges: A:R.367 FMT.6: 1 residues within 4Å: Chain A: R.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.96 FMT.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) FMT.8: 4 residues within 4Å: Chain A: H.129, G.130, S.131, P.132 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.129 FMT.9: 5 residues within 4Å: Chain A: R.53, H.337, G.341, H.342, H.346 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.53, A:H.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montemiglio, L.C. et al., Point Mutations at a Key Site Alter the Cytochrome P450 OleP Structural Dynamics. Biomolecules (2021)

Release Date

2022-01-26

Peptides

Cytochrome P-450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Cytochrome P-450

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