SMTL ID : 7r7j.2 (1 other biounit)

Crystal structure of RadD with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: F.3, T.4, L.5, R.6, Q.9, T.33, G.34, A.35, G.36, K.37, L.39, K.68, R.343 Ligands: MG.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:R.6, A:R.6, A:R.6, A:Q.9, A:Q.9, A:G.34, A:A.35, A:G.36, A:K.37 Water bridges: A:T.4 Salt bridges: A:K.37, A:K.68, A:K.68, A:R.343, A:R.343 pi-Cation interactions: A:R.6

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: G.36, K.37, S.38, K.68 Ligands: ADP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.38

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 7 residues within 4Å: Chain A: C.384, A.386, C.387, F.389, C.411, C.425, F.427 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.384, A:C.387, A:C.411, A:C.425 ZN.4: 8 residues within 4Å: Chain A: C.434, Q.436, C.437, A.439, C.448, E.450, C.451, T.453 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.434, A:C.437, A:C.448, A:C.451

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osorio Garcia, M.A. et al., X-ray crystal structure of the Escherichia coli RadD DNA repair protein bound to ADP reveals a novel zinc ribbon domain. Plos One (2022)

Release Date

2022-04-13

Peptides

Putative DNA repair helicase RadD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Putative DNA repair helicase RadD

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