SMTL ID : 8h5y.2 (1 other biounit)

Crystal structure of RadD- ADP complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.384, C.387, C.411, C.425 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.384, A:C.387, A:C.411, A:C.425

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 13 residues within 4Å: Chain A: T.4, L.5, R.6, Q.9, T.33, G.34, A.35, G.36, K.37, L.39, K.68, R.343 Ligands: MG.3 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.4, A:R.6, A:R.6, A:Q.9, A:G.34, A:A.35, A:G.36, A:K.37 Water bridges: A:T.4, A:L.344, A:L.344 Salt bridges: A:K.37, A:K.68, A:K.68, A:R.343, A:R.343 pi-Cation interactions: A:R.6

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: G.36, K.37, S.38 Ligands: ADP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tian, L.F. et al., Biochemical and Structural Analyses Shed Light on the Mechanisms of RadD DNA Binding and Its ATPase from Escherichia coli. Int J Mol Sci (2023)

Release Date

2023-10-18

Peptides

Putative DNA repair helicase RadD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative DNA repair helicase RadD

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