SMTL ID : 7r9n.1

Crystal structure of HPK1 in complex with GNE1858

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x F97: N-{2-(3,3-difluoropyrrolidin-1-yl)-6-[(3R)-pyrrolidin-3-yl]pyrimidin-4-yl}-1-(propan-2-yl)-1H-pyrazolo[4,3-c]pyridin-6-amine(Non-covalent)

F97.1: 15 residues within 4Å: Chain A: L.24, G.25, Y.29, V.32, A.45, M.92, E.93, F.94, C.95, G.96, A.97, G.98, D.102, L.145 Ligands: EDO.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.32, A:A.45 Hydrogen bonds: A:C.95, A:C.95 Water bridges: A:G.96, A:A.97 F97.3: 15 residues within 4Å: Chain B: L.24, G.25, Y.29, V.32, A.45, V.76, M.92, E.93, F.94, C.95, G.96, A.97, G.98, D.102, L.145 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:A.45 Hydrogen bonds: B:C.95, B:C.95 Water bridges: B:A.97, B:D.156

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: S.99, D.102, L.145 Ligands: F97.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.102 Water bridges: A:A.142

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.4: 6 residues within 4Å: Chain B: K.190, G.192, Y.193, N.194, P.260, K.261 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.192, B:N.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chan, B.K. et al., Discovery of Spiro-azaindoline Inhibitors of Hematopoietic Progenitor Kinase 1 (HPK1). Acs Med.Chem.Lett. (2022)

Release Date

2022-01-05

Peptides

Hematopoietic progenitor kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hematopoietic progenitor kinase

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