SMTL ID : 7r9p.1

Crystal structure of HPK1 in complex with compound 14

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

homo-dimer

Ligands

2 x 2WI: 6-amino-2-fluoro-N,N-dimethyl-3-(4'-methylspiro[cyclopropane-1,3'-pyrrolo[2,3-b]pyridin]-5'-yl)benzamide(Non-covalent)

2WI.1: 17 residues within 4Å: Chain A: Q.22, L.24, G.25, Y.29, V.32, A.45, V.76, M.92, E.93, F.94, C.95, G.96, A.97, G.98, S.99, D.102, L.145 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.29, A:Y.29, A:V.32, A:L.145 Hydrogen bonds: A:G.25, A:C.95, A:D.102 2WI.3: 15 residues within 4Å: Chain B: L.24, G.25, Y.29, V.32, A.45, V.76, M.92, E.93, F.94, C.95, G.96, G.98, S.99, D.102, L.145 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.29, B:Y.29, B:V.32, B:L.145 Hydrogen bonds: B:G.25, B:C.95, B:D.102

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: F.10, N.11, R.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.11 Salt bridges: A:R.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chan, B.K. et al., Discovery of Spiro-azaindoline Inhibitors of Hematopoietic Progenitor Kinase 1 (HPK1). Acs Med.Chem.Lett. (2022)

Release Date

2022-01-05

Peptides

Hematopoietic progenitor kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hematopoietic progenitor kinase

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