SMTL ID : 7rek.2 (1 other biounit)

Crystal structure of the first bromodomain (BD1) of human BRD4 in complex with dual BRD4-JAK2 inhibitor MA9-086

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x R6S: N~4~-[1-(tert-butylsulfonyl)-2,3-dihydro-1H-indol-6-yl]-N~2~-[3-fluoro-4-(1-methylpiperidin-4-yl)phenyl]-5-methylpyrimidine-2,4-diamine(Non-covalent)

R6S.1: 10 residues within 4Å: Chain A: W.39, P.40, F.41, P.44, V.45, D.46, K.49, L.50, N.98, I.104 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.40, A:F.41, A:V.45, A:L.50 Hydrogen bonds: A:P.40, A:D.46, A:N.98, A:N.98 Water bridges: A:Y.55 pi-Stacking: A:W.39, A:W.39

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: I.58, I.59, K.60, T.61, N.93 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.58, A:K.60, A:T.61, A:T.61, A:T.61, A:N.93 EDO.3: 6 residues within 4Å: Chain A: R.16, T.18, Q.20, W.78, N.79, A.80 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.18, A:A.80 Water bridges: A:Q.81, A:E.126 EDO.4: 4 residues within 4Å: Chain A: F.37, D.103, L.106, M.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karim, M.R. et al., Crystal structure of the first bromodomain (BD1) of human BRD4 in complex with dual BRD4-JAK2 inhibitor MA9-086. To Be Published

Release Date

2021-07-21

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bromodomain-containing protein 4

Related Entries With Identical Sequence