SMTL ID : 7rh7.1

Mycobacterial CIII2CIV2 supercomplex, Telacebec (Q203) bound

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

4 x 9XX: (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate(Covalent)

9XX.1: 21 residues within 4Å: Chain A: C.1 Chain C: L.48, F.52, L.125, I.128, A.129, F.131, I.132 Chain H: V.71, F.75, F.79, V.82 Chain K: V.414, I.418 Ligands: PLM.2, HEA.7, CDL.8, MQ9.12, 9Y0.14, CDL.15, 9YF.29 7 PLIP interactions: 3 interactions with chain H, 3 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: H:V.71, H:F.79, H:V.82, C:L.125, C:I.128, C:A.129 Hydrogen bonds: A:C.1 9XX.16: 10 residues within 4Å: Chain I: C.1 Chain K: F.317, Y.318, P.319, I.324, V.328, W.329, V.332 Ligands: PLM.17, 9YF.63 6 PLIP interactions: 6 interactions with chain K Hydrophobic interactions: K:F.317, K:F.317, K:P.319, K:V.328, K:W.329, K:V.332 9XX.43: 11 residues within 4Å: Chain S: C.1 Chain V: E.316, F.317, Y.318, P.319, I.324, V.328, W.329, V.332 Ligands: PLM.44, 9YF.60 8 PLIP interactions: 8 interactions with chain V Hydrophobic interactions: V:F.317, V:F.317, V:F.317, V:P.319, V:V.328, V:W.329, V:W.329, V:V.332 9XX.46: 21 residues within 4Å: Chain M: F.52, Q.69, L.121, L.125, I.128, A.129, F.131, I.132 Chain R: V.71, F.75, F.79 Chain T: C.1 Chain V: L.415, I.418 Ligands: 9Y0.35, CDL.36, MQ9.40, CDL.42, PLM.45, CDL.57, 9YF.58 4 PLIP interactions: 2 interactions with chain M, 1 interactions with chain R, 1 interactions with chain T Hydrophobic interactions: M:L.125, M:A.129, R:F.75 Hydrogen bonds: T:C.1

4 x PLM: PALMITIC ACID(Covalent)

PLM.2: 19 residues within 4Å: Chain A: C.1, S.2, A.3 Chain C: V.45, L.48, M.49, F.52, L.65, Q.69, Q.72, L.73, I.128, F.131, T.133, P.134, G.136 Ligands: 9XX.1, HEA.7, CDL.8 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:F.52, C:L.73, C:F.131, C:F.131, C:F.131 Hydrogen bonds: A:S.2 PLM.17: 9 residues within 4Å: Chain H: F.58, V.61, R.64 Chain I: C.1 Chain K: W.315, E.316, F.317, W.329 Ligands: 9XX.16 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain K Hydrophobic interactions: H:V.61, H:R.64, K:W.315, K:F.317 PLM.44: 10 residues within 4Å: Chain R: F.58, V.61, R.64 Chain S: C.1 Chain V: W.312, W.315, E.316, F.317, W.329 Ligands: 9XX.43 2 PLIP interactions: 1 interactions with chain V, 1 interactions with chain R Hydrophobic interactions: V:W.315, R:F.58 PLM.45: 19 residues within 4Å: Chain M: V.45, L.48, M.49, F.52, L.65, Q.69, Q.72, L.73, I.128, F.131, T.133, P.134, G.136 Chain T: C.1, S.2, A.3 Ligands: HEA.34, CDL.36, 9XX.46 3 PLIP interactions: 2 interactions with chain T, 1 interactions with chain M Hydrogen bonds: T:S.2, T:A.3 Hydrophobic interactions: M:F.131

6 x CU: COPPER (II) ION(Non-covalent)

CU.3: 9 residues within 4Å: Chain B: H.206, G.207, C.247, T.248, E.249, M.250, C.251, H.255 Chain C: Y.452 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:C.247, B:C.247, B:E.249, B:C.251, B:H.255 CU.4: 5 residues within 4Å: Chain B: W.112, H.206, C.247, C.251, M.258 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.206, B:H.206, B:C.251 CU.5: 5 residues within 4Å: Chain C: H.255, V.301, W.302, H.304, H.305 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.255, C:H.304, C:H.304, C:H.305 CU.30: 6 residues within 4Å: Chain L: H.206, C.247, M.250, C.251, H.255, M.258 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:C.247, L:C.251, L:H.255 CU.31: 6 residues within 4Å: Chain L: Q.111, W.112, V.204, H.206, C.251, M.258 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:H.206, L:H.206 CU.32: 3 residues within 4Å: Chain M: H.255, H.304, H.305 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:H.255, M:H.304, M:H.305

4 x HEA: HEME-A(Covalent)(Non-covalent)

HEA.6: 44 residues within 4Å: Chain B: V.34, V.38, P.76, I.79, I.80 Chain C: L.82, W.142, T.143, W.251, V.258, Y.259, I.261, A.262, F.266, H.304, H.305, Y.307, T.321, I.324, A.325, V.326, T.328, G.329, F.333, F.360, L.361, G.364, L.365, G.367, V.368, L.370, A.371, D.376, T.380, D.381, V.385, H.388, F.389, V.392, L.393, T.396, I.397, R.450 Ligands: HEA.7 26 PLIP interactions: 24 interactions with chain C, 2 interactions with chain B, Hydrophobic interactions: C:W.251, C:V.258, C:V.258, C:T.321, C:A.325, C:T.328, C:F.360, C:L.361, C:L.370, C:V.385, C:F.389, C:F.389, C:V.392, C:L.393, C:L.393, B:V.34, B:P.76 Hydrogen bonds: C:Y.259, C:T.328, C:T.380, C:D.381 Salt bridges: C:R.450 pi-Stacking: C:H.388, C:H.388 pi-Cation interactions: C:H.304 Metal complexes: C:H.388 HEA.7: 43 residues within 4Å: Chain C: F.43, L.44, V.45, G.47, L.48, A.50, L.51, M.53, R.54, L.57, F.70, F.74, T.75, H.77, G.78, M.81, L.82, Y.85, A.86, G.141, W.142, Y.383, I.386, F.389, H.390, L.393, F.394, I.397, V.398, T.436, F.437, Q.440, R.450, R.451, Y.452, A.472, L.475, G.476, M.479 Ligands: 9XX.1, PLM.2, HEA.6, CDL.8 27 PLIP interactions: 27 interactions with chain C, Hydrophobic interactions: C:F.43, C:L.48, C:A.50, C:F.74, C:M.81, C:I.386, C:F.389, C:F.389, C:L.393, C:I.397, C:F.437, C:A.472, C:M.479 Hydrogen bonds: C:F.74, C:W.142, C:R.451, C:Y.452 Salt bridges: C:R.450, C:R.451 pi-Stacking: C:H.77, C:H.77, C:H.390, C:H.390, C:F.437 pi-Cation interactions: C:H.390 Metal complexes: C:H.77, C:H.390 HEA.33: 45 residues within 4Å: Chain L: V.34, V.38, P.76, I.79, I.80 Chain M: L.82, W.142, T.143, W.251, V.258, Y.259, I.261, A.262, F.266, H.304, H.305, Y.307, T.321, I.324, A.325, V.326, T.328, G.329, F.332, F.333, F.360, L.361, G.364, L.365, G.367, V.368, L.370, A.371, D.376, T.380, D.381, V.385, H.388, F.389, V.392, L.393, T.396, I.397, R.450 Ligands: HEA.34 27 PLIP interactions: 3 interactions with chain L, 24 interactions with chain M, Hydrophobic interactions: L:V.34, L:P.76, L:I.80, M:V.258, M:V.258, M:T.321, M:F.333, M:F.333, M:F.360, M:L.361, M:L.370, M:L.370, M:V.385, M:F.389, M:F.389, M:V.392, M:V.392, M:L.393, M:L.393 Hydrogen bonds: M:Y.259, M:T.328, M:T.380 Salt bridges: M:R.450 pi-Stacking: M:H.388, M:H.388 pi-Cation interactions: M:H.304 Metal complexes: M:H.388 HEA.34: 45 residues within 4Å: Chain M: F.43, L.44, V.45, G.46, G.47, L.48, A.50, L.51, M.53, R.54, L.57, F.70, F.74, T.75, H.77, G.78, M.81, L.82, Y.85, A.86, G.141, W.142, T.143, Y.383, I.386, F.389, H.390, L.393, F.394, I.397, V.398, F.433, T.436, F.437, Q.440, R.450, R.451, Y.452, A.472, L.475, G.476, M.479 Ligands: HEA.33, CDL.36, PLM.45 32 PLIP interactions: 32 interactions with chain M, Hydrophobic interactions: M:F.43, M:F.43, M:L.44, M:L.44, M:L.48, M:A.50, M:L.51, M:R.54, M:F.74, M:M.81, M:L.82, M:F.389, M:F.389, M:L.393, M:I.397, M:F.437, M:A.472 Hydrogen bonds: M:F.74, M:W.142, M:R.451, M:Y.452 Salt bridges: M:R.450, M:R.451 pi-Stacking: M:H.77, M:H.77, M:F.389, M:H.390, M:H.390, M:F.437 pi-Cation interactions: M:H.390 Metal complexes: M:H.77, M:H.390

16 x CDL: CARDIOLIPIN(Non-covalent)

CDL.8: 34 residues within 4Å: Chain C: M.12, G.13, P.14, K.15, G.16, N.17, L.18, I.19, L.22, I.23, L.30, I.33, M.34, V.37, V.38, A.41, V.45, F.117, W.118, L.121, V.483, V.486, F.487, W.490, R.491 Chain K: I.418, F.421, V.422, R.425 Ligands: 9XX.1, PLM.2, HEA.7, CDL.15, CDL.28 Ligand excluded by PLIP CDL.10: 27 residues within 4Å: Chain D: F.107, I.152, L.155, V.156, V.159, L.160, A.163, K.166, M.167 Chain E: I.122, C.126, F.130, W.134 Chain J: A.211, W.218 Chain K: M.264, V.268, L.271 Chain X: L.49, W.53, L.99, L.102, I.106, L.110, K.113, K.114 Ligands: CDL.13 Ligand excluded by PLIP CDL.11: 36 residues within 4Å: Chain C: F.109, P.110, R.111, L.112, L.115, L.119, L.171, L.175, V.178 Chain D: R.15, V.25, G.28, T.29, W.32, E.36, L.149, H.150, I.152, G.153, V.156, A.157, L.160, L.161, R.164, A.177, V.180, V.181, Y.184 Chain E: A.86, I.95, I.122, V.125, L.128, V.129, Y.133 Ligands: 9Y0.9 Ligand excluded by PLIP CDL.13: 24 residues within 4Å: Chain E: W.91, A.119, I.122, T.123, C.126, G.127, W.134, G.135, E.137 Chain J: I.207, V.210, A.211, G.214, V.215, M.217, W.218, R.222 Chain K: M.264, R.484, K.487 Chain X: K.113 Ligands: CDL.10, 9YF.20, CDL.27 Ligand excluded by PLIP CDL.15: 34 residues within 4Å: Chain C: M.12, K.15, V.37, V.38, A.41, F.42, F.487 Chain H: I.45, M.48, H.49, G.51, G.52, S.55, V.82, I.83, A.85, L.86, V.87, R.89, N.90, L.93, R.94 Chain K: L.380, M.412, V.413, V.414, P.416, A.417, I.418, Y.420, F.421, R.425 Ligands: 9XX.1, CDL.8 Ligand excluded by PLIP CDL.26: 27 residues within 4Å: Chain K: I.13, Y.17, P.19, A.22, V.23, R.25, Q.26, L.44, L.217, A.218, I.220, G.221, A.222, L.224, A.225, L.226, W.228, F.229 Chain V: Y.17, H.18, P.19, A.22, R.25, A.136, L.226 Ligands: MQ9.25, CDL.55 Ligand excluded by PLIP CDL.27: 27 residues within 4Å: Chain C: I.19, Y.20, I.23, T.24 Chain E: W.90, W.91, I.93, L.94, L.97, S.98, T.101, F.120, T.123, S.124 Chain J: R.222 Chain K: R.363, R.365, V.422, W.426, L.430, P.480, L.481, K.483, R.484, K.487 Ligands: CDL.13, CDL.28 Ligand excluded by PLIP CDL.28: 35 residues within 4Å: Chain J: I.213, M.217, R.222, A.223 Chain K: H.34, W.35, S.36, L.39, V.119, A.122, R.123, F.126, T.127, F.235, R.363, P.364, R.365, T.371, S.375, I.378, A.379, L.382, L.415, I.418, V.419, V.422, A.423, W.426, A.427, L.430, P.480 Ligands: CDL.8, MQ9.24, CDL.27, 9YF.29 Ligand excluded by PLIP CDL.36: 32 residues within 4Å: Chain M: M.12, G.13, P.14, K.15, G.16, N.17, L.18, I.19, L.22, L.30, I.33, M.34, V.37, V.38, A.41, L.44, V.45, F.117, W.118, L.121, V.486, F.487, W.490, R.491 Chain V: I.418, F.421, V.422, R.425 Ligands: HEA.34, CDL.42, PLM.45, 9XX.46 Ligand excluded by PLIP CDL.38: 30 residues within 4Å: Chain N: F.107, L.111, I.152, L.155, V.156, V.159, L.160, A.163, K.166, M.167 Chain O: I.122, C.126, F.130, W.134 Chain U: I.207, A.211, V.215, W.218 Chain V: M.264, V.268, L.271 Chain W: L.49, W.53, L.99, L.102, I.106, L.110, K.113, K.114 Ligands: CDL.41 Ligand excluded by PLIP CDL.39: 36 residues within 4Å: Chain M: F.109, P.110, R.111, L.112, L.115, L.119, L.171, L.175, V.178 Chain N: R.15, V.25, G.28, T.29, W.32, E.36, F.146, L.149, H.150, I.152, G.153, V.156, A.157, L.160, L.161, R.164, A.177, V.180, V.181, Y.184 Chain O: I.95, F.99, I.122, V.125, L.128, V.129 Ligands: 9Y0.37 Ligand excluded by PLIP CDL.41: 20 residues within 4Å: Chain O: W.91, A.119, I.122, T.123, C.126, G.127, W.134 Chain U: I.207, V.210, A.211, G.214, V.215, M.217, W.218, R.222 Chain V: R.484, K.487 Ligands: CDL.38, 9YF.49, CDL.56 Ligand excluded by PLIP CDL.42: 36 residues within 4Å: Chain M: M.12, K.15, L.18, V.37, V.38, A.41, F.42, L.121, F.487, W.490, R.491 Chain R: I.45, M.48, H.49, G.51, G.52, S.55, I.83, A.85, L.86, V.87, R.89, N.90, R.94 Chain V: L.380, M.412, V.413, V.414, P.416, A.417, I.418, Y.420, F.421, R.425 Ligands: CDL.36, 9XX.46 Ligand excluded by PLIP CDL.55: 26 residues within 4Å: Chain K: Y.17, H.18, P.19, A.22, R.25, A.136, L.226 Chain V: I.13, Y.17, P.19, A.22, V.23, R.25, Q.26, L.217, A.218, I.220, G.221, A.222, L.224, A.225, L.226, W.228, F.229 Ligands: CDL.26, MQ9.54 Ligand excluded by PLIP CDL.56: 30 residues within 4Å: Chain M: I.19, Y.20, I.23, T.24 Chain O: W.90, W.91, I.93, L.94, L.97, S.98, T.101, F.120, T.123, S.124 Chain U: M.217, R.222 Chain V: R.363, R.365, V.422, W.426, L.430, S.433, P.480, L.481, P.482, K.483, R.484, K.487 Ligands: CDL.41, CDL.57 Ligand excluded by PLIP CDL.57: 34 residues within 4Å: Chain U: I.213, M.217, R.222, A.223 Chain V: H.34, W.35, S.36, L.39, V.119, A.122, R.123, F.126, T.127, F.235, R.363, P.364, R.365, T.371, S.375, I.378, L.382, L.415, I.418, V.419, V.422, A.423, W.426, A.427, L.430, P.480 Ligands: 9XX.46, MQ9.53, CDL.56, 9YF.58 Ligand excluded by PLIP

4 x 9Y0: (2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate(Non-covalent)

9Y0.9: 26 residues within 4Å: Chain C: M.164, A.167, V.168, F.223, A.226, A.227, H.230, L.231 Chain D: Y.121, V.125, T.130, I.131, P.132, Y.141, L.142, G.145, F.146, L.149 Chain E: F.99, A.102, A.103, A.106, W.109, I.114, V.118 Ligands: CDL.11 14 PLIP interactions: 4 interactions with chain E, 8 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: E:F.99, E:A.103, E:W.109, E:I.114, D:Y.121, D:Y.121, D:V.125, D:Y.141, D:Y.141, D:L.142, D:F.146, C:A.226, C:A.227 Hydrogen bonds: D:I.131 9Y0.14: 22 residues within 4Å: Chain A: C.1, G.4, Q.5, I.6 Chain B: L.309 Chain C: L.48, F.52, F.64, L.65, S.66, Q.69 Chain H: V.68, G.69, H.70, V.71, W.74, F.75, G.78, F.79, V.82 Ligands: 9XX.1, 9YF.29 6 PLIP interactions: 4 interactions with chain H, 1 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: H:V.71, H:W.74, H:W.74, H:F.79, B:L.309, A:I.6 9Y0.35: 22 residues within 4Å: Chain L: L.309 Chain M: L.48, F.52, F.64, L.65, S.66, Q.69 Chain R: V.68, G.69, H.70, V.71, W.74, F.75, G.78, F.79, V.82 Chain T: C.1, G.4, Q.5, I.6 Ligands: 9XX.46, 9YF.58 7 PLIP interactions: 5 interactions with chain R, 1 interactions with chain M, 1 interactions with chain T Hydrophobic interactions: R:V.71, R:W.74, R:W.74, R:F.75, R:F.79, M:F.64, T:I.6 9Y0.37: 27 residues within 4Å: Chain M: M.164, A.167, V.168, F.223, A.226, A.227, H.230, L.231 Chain N: Y.121, V.125, E.126, T.130, I.131, P.132, Y.141, L.142, G.145, F.146, L.149 Chain O: F.99, A.102, A.103, A.106, W.109, I.114, V.118 Ligands: CDL.39 15 PLIP interactions: 3 interactions with chain O, 8 interactions with chain N, 4 interactions with chain M Hydrophobic interactions: O:A.106, O:W.109, O:I.114, N:Y.121, N:Y.121, N:V.125, N:Y.141, N:Y.141, N:L.142, N:F.146, M:F.223, M:A.226, M:A.227, M:L.231 Hydrogen bonds: N:T.130

6 x MQ9: MENAQUINONE-9(Non-covalent)

MQ9.12: 39 residues within 4Å: Chain C: F.122, L.125, I.126, A.129, I.132, L.161 Chain E: L.97, S.100, T.101, V.104, L.108, W.112, L.113, F.120 Chain J: Y.190, L.192, G.193, F.195, A.198, P.199, M.202 Chain K: L.311, L.383, F.386, A.387, M.389, N.390, I.392, I.393, K.396, F.397, I.399, T.404, I.407, G.408 Ligands: 9XX.1, 9YF.20, MQ9.24, 9YF.29 25 PLIP interactions: 8 interactions with chain E, 5 interactions with chain C, 10 interactions with chain K, 2 interactions with chain J Hydrophobic interactions: E:L.97, E:T.101, E:V.104, E:W.112, E:W.112, E:L.113, C:F.122, C:L.125, C:I.126, C:A.129, C:I.132, K:F.386, K:A.387, K:I.392, K:I.393, K:F.397, K:F.397, K:F.397, K:T.404, K:I.407, J:P.199, J:P.199 pi-Stacking: E:W.112, E:W.112 Hydrogen bonds: K:K.396 MQ9.24: 40 residues within 4Å: Chain J: A.198, G.201, M.202, W.205, I.206, M.209, V.210, I.213 Chain K: M.118, V.119, L.121, A.122, F.125, F.126, W.138, L.145, M.149, F.300, M.303, W.304, L.336, V.337, F.338, L.340, L.341, Y.344, I.373, G.374, A.377, I.378, L.380, Y.381, L.382, T.385, F.386, M.389 Ligands: MQ9.12, 9YF.20, CDL.28, 9YF.29 26 PLIP interactions: 23 interactions with chain K, 3 interactions with chain J Hydrophobic interactions: K:M.118, K:V.119, K:L.121, K:F.125, K:F.125, K:L.145, K:F.300, K:V.337, K:L.340, K:L.340, K:L.341, K:Y.344, K:I.373, K:A.377, K:I.378, K:L.380, K:Y.381, K:Y.381, K:Y.381, K:L.382, K:T.385, K:F.386, J:W.205, J:I.206 Hydrogen bonds: K:Y.381 pi-Stacking: J:W.205 MQ9.25: 40 residues within 4Å: Chain K: F.31, E.41, L.44, Y.45, I.48, I.49, L.52, T.53, W.56, G.98, F.101, V.102, V.105, L.224, V.227, W.228, H.232, F.254, A.255, V.256, S.258, G.259, A.260, F.262, A.263, T.266 Chain W: L.161, L.165, F.168, T.172, A.175, F.176 Chain X: F.68, F.97, I.101, I.104, G.105, A.108 Ligands: HEM.21, CDL.26 20 PLIP interactions: 10 interactions with chain K, 6 interactions with chain W, 4 interactions with chain X Hydrophobic interactions: K:I.48, K:L.52, K:T.53, K:F.101, K:F.101, K:V.102, K:V.227, K:W.228, K:F.262, K:A.263, W:L.165, W:F.168, W:T.172, W:A.175, W:F.176, W:F.176, X:F.97, X:I.101, X:I.104, X:A.108 MQ9.40: 39 residues within 4Å: Chain M: F.122, L.125, I.126, A.129, I.132, L.161 Chain O: L.97, S.100, T.101, V.104, L.108, W.112, L.113, F.120 Chain U: Y.190, L.192, G.193, A.198, P.199, M.202, A.203 Chain V: L.311, L.383, F.386, A.387, M.389, N.390, I.392, I.393, K.396, F.397, I.399, T.404, I.407, G.408 Ligands: 9XX.46, 9YF.49, MQ9.53, 9YF.58 23 PLIP interactions: 5 interactions with chain M, 9 interactions with chain V, 8 interactions with chain O, 1 interactions with chain U Hydrophobic interactions: M:F.122, M:L.125, M:I.126, M:A.129, M:I.132, V:F.386, V:A.387, V:I.392, V:I.393, V:F.397, V:F.397, V:F.397, V:I.399, V:I.407, O:T.101, O:V.104, O:W.112, O:W.112, O:L.113, U:P.199 pi-Stacking: O:W.112, O:W.112, O:W.112 MQ9.53: 39 residues within 4Å: Chain U: A.198, G.201, M.202, W.205, I.206, M.209, V.210, I.213 Chain V: M.118, V.119, L.121, A.122, F.125, F.126, W.138, L.145, M.149, F.300, M.303, W.304, L.336, V.337, F.338, L.340, L.341, Y.344, I.373, G.374, A.377, I.378, L.380, Y.381, L.382, T.385, F.386, M.389 Ligands: MQ9.40, CDL.57, 9YF.58 28 PLIP interactions: 5 interactions with chain U, 23 interactions with chain V Hydrophobic interactions: U:W.205, U:W.205, U:W.205, U:W.205, U:I.206, V:M.118, V:A.122, V:F.125, V:F.125, V:F.125, V:L.145, V:F.300, V:V.337, V:V.337, V:L.340, V:L.340, V:L.341, V:I.373, V:A.377, V:A.377, V:I.378, V:L.380, V:Y.381, V:Y.381, V:Y.381, V:L.382, V:T.385 Hydrogen bonds: V:Y.381 MQ9.54: 40 residues within 4Å: Chain V: F.31, E.41, L.44, Y.45, I.48, I.49, L.52, T.53, W.56, G.98, F.101, V.102, V.105, L.224, V.227, W.228, H.232, F.254, A.255, V.256, S.258, G.259, A.260, F.262, A.263, T.266 Chain W: F.68, F.97, I.101, I.104, G.105, A.108 Chain X: L.161, L.165, F.168, T.172, A.175, F.176 Ligands: HEM.50, CDL.55 26 PLIP interactions: 7 interactions with chain X, 16 interactions with chain V, 3 interactions with chain W Hydrophobic interactions: X:L.165, X:F.168, X:T.172, X:A.175, X:F.176, X:F.176, X:F.176, V:F.31, V:Y.45, V:I.48, V:L.52, V:L.52, V:T.53, V:F.101, V:F.101, V:V.102, V:L.224, V:V.227, V:W.228, V:F.262, V:F.262, V:F.262, V:A.263, W:I.101, W:I.104, W:A.108

4 x HEC: HEME C(Covalent)(Non-covalent)

HEC.18: 33 residues within 4Å: Chain A: T.9, T.10, Q.12, P.14, A.15 Chain B: W.112, F.254 Chain J: F.12, S.15, C.16, C.19, H.20, R.30, G.31, P.32, L.34, T.37, A.41, V.42, Q.45, V.46, M.51, P.52, A.53, M.54, A.60, F.67, L.75, V.79, T.153, G.154, P.155, Q.156 15 PLIP interactions: 13 interactions with chain J, 1 interactions with chain A, 1 interactions with chain B, Hydrophobic interactions: J:P.32, J:L.34, J:L.34, J:T.37, J:A.41, J:V.42, J:Q.45, J:A.53, J:F.67, B:W.112 Hydrogen bonds: J:Q.45, J:Q.156, J:Q.156, A:A.15 Metal complexes: J:H.20 HEC.19: 38 residues within 4Å: Chain J: F.44, Q.45, T.48, R.50, Q.59, A.60, S.62, F.113, N.116, C.117, S.119, C.120, H.121, L.130, Y.135, A.136, P.137, D.138, L.139, D.141, A.142, Q.146, I.147, A.150, M.151, P.155, Q.156, N.157, M.158, P.159, F.161, L.166, I.174, V.178 Chain X: M.240, L.316, Y.317, E.318 19 PLIP interactions: 19 interactions with chain J, Hydrophobic interactions: J:F.44, J:N.116, J:L.130, J:L.130, J:P.137, J:L.139, J:A.142, J:I.147, J:A.150, J:P.155, J:P.159, J:L.166, J:I.174 Hydrogen bonds: J:Q.45, J:D.138, J:Q.156 Salt bridges: J:R.50, J:R.50 Metal complexes: J:H.121 HEC.47: 34 residues within 4Å: Chain L: W.112, F.254 Chain T: T.9, T.10, Q.12, P.14, A.15, V.16 Chain U: F.12, S.15, C.16, C.19, H.20, R.30, G.31, P.32, L.34, T.37, A.41, V.42, Q.45, V.46, M.51, P.52, A.53, M.54, A.60, F.67, L.75, V.79, T.153, G.154, P.155, Q.156 15 PLIP interactions: 13 interactions with chain U, 1 interactions with chain L, 1 interactions with chain T, Hydrophobic interactions: U:P.32, U:L.34, U:T.37, U:A.41, U:V.42, U:Q.45, U:M.51, U:A.53, U:F.67, L:W.112 Hydrogen bonds: U:Q.45, U:Q.156, U:Q.156, T:A.15 Metal complexes: U:H.20 HEC.48: 38 residues within 4Å: Chain U: F.44, Q.45, T.48, R.50, Q.59, A.60, S.62, F.113, N.116, C.117, S.119, C.120, H.121, L.130, Y.135, A.136, P.137, D.138, L.139, D.141, A.142, Q.146, I.147, A.150, M.151, P.155, Q.156, N.157, M.158, P.159, F.161, L.166, I.174, V.178 Chain W: M.240, L.316, Y.317, E.318 20 PLIP interactions: 20 interactions with chain U, Hydrophobic interactions: U:F.44, U:N.116, U:L.130, U:L.130, U:P.137, U:L.139, U:L.139, U:A.142, U:I.147, U:A.150, U:P.155, U:P.159, U:F.161, U:L.166, U:I.174 Hydrogen bonds: U:D.138, U:Q.156 Salt bridges: U:R.50, U:R.50 Metal complexes: U:H.121

8 x 9YF: (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate(Non-covalent)

9YF.20: 27 residues within 4Å: Chain E: T.101, P.111, W.112, L.113, A.115, A.116, F.120 Chain J: K.126, D.138, G.140, A.182, E.183, P.185, S.186, G.189, Y.190, G.191, L.192, M.202, A.203, I.206, I.207 Chain K: L.275, L.276 Ligands: MQ9.12, CDL.13, MQ9.24 18 PLIP interactions: 6 interactions with chain E, 9 interactions with chain J, 3 interactions with chain K Hydrophobic interactions: E:P.111, E:W.112, E:W.112, E:A.116, E:F.120, E:F.120, J:Y.190, J:Y.190, J:L.192, J:I.206, J:I.206, K:L.275, K:L.275, K:L.276 Hydrogen bonds: J:K.126, J:G.140, J:A.182, J:G.191 9YF.29: 29 residues within 4Å: Chain A: C.1, S.2, I.6, S.7, Q.8 Chain C: I.132 Chain H: G.69, V.71, E.72, F.75, F.79 Chain J: S.132 Chain K: L.382, L.383, F.386, S.400, N.402, A.403, W.406, I.407, I.410, G.411, V.414, L.415 Ligands: 9XX.1, MQ9.12, 9Y0.14, MQ9.24, CDL.28 15 PLIP interactions: 3 interactions with chain H, 8 interactions with chain K, 1 interactions with chain J, 3 interactions with chain A Hydrophobic interactions: H:F.75, H:F.79, K:F.386, K:W.406, K:I.407, K:I.407, K:I.407, K:I.410, K:L.415 Hydrogen bonds: H:E.72, K:S.400, J:S.132, A:I.6, A:I.6, A:Q.8 9YF.49: 28 residues within 4Å: Chain O: T.101, P.111, W.112, L.113, A.115, A.116, F.120 Chain U: K.126, D.138, G.140, A.182, E.183, P.185, S.186, G.189, Y.190, G.191, L.192, M.202, A.203, I.206, I.207 Chain V: L.271, M.272, L.275, L.276 Ligands: MQ9.40, CDL.41 15 PLIP interactions: 9 interactions with chain U, 5 interactions with chain O, 1 interactions with chain V Hydrophobic interactions: U:Y.190, U:Y.190, U:I.207, U:I.207, O:P.111, O:W.112, O:A.115, O:A.116, O:F.120, V:L.275 Hydrogen bonds: U:K.126, U:D.138, U:G.140, U:A.182, U:G.191 9YF.58: 30 residues within 4Å: Chain M: I.132 Chain R: G.69, H.70, V.71, E.72, F.75, F.79 Chain T: C.1, S.2, I.6, S.7, Q.8 Chain U: S.132 Chain V: L.382, L.383, F.386, S.400, N.402, A.403, W.406, I.407, I.410, G.411, V.414, L.415 Ligands: 9Y0.35, MQ9.40, 9XX.46, MQ9.53, CDL.57 17 PLIP interactions: 1 interactions with chain U, 6 interactions with chain V, 3 interactions with chain T, 1 interactions with chain M, 6 interactions with chain R Hydrogen bonds: U:S.132, V:N.402, T:S.2, T:I.6, T:Q.8, R:E.72, R:E.72, R:E.72 Hydrophobic interactions: V:F.386, V:W.406, V:I.407, V:I.410, V:I.410, M:I.132, R:F.75, R:F.75, R:F.79 9YF.60: 22 residues within 4Å: Chain V: I.179, P.180, V.181, I.182, W.185, M.186, A.189, P.319, F.320, H.322, I.324, V.328, A.331, V.332 Chain W: I.181, W.185, W.200, W.378, E.379 Ligands: 9XX.43, HUU.52, 9YF.61 19 PLIP interactions: 12 interactions with chain V, 7 interactions with chain W Hydrophobic interactions: V:I.179, V:P.180, V:W.185, V:W.185, V:W.185, V:A.189, V:F.320, V:I.324, V:V.328, V:V.332, W:I.181, W:W.378, W:W.378, W:E.379 Salt bridges: V:H.322, V:H.322 Hydrogen bonds: W:W.200, W:W.378, W:E.379 9YF.61: 20 residues within 4Å: Chain K: E.95, V.96, R.97 Chain V: W.185 Chain W: A.170, L.173, V.174, I.177, G.178, G.179, I.181, K.182, N.183, K.186 Chain X: L.65, F.68, L.69, F.70, W.73 Ligands: 9YF.60 16 PLIP interactions: 7 interactions with chain W, 4 interactions with chain X, 5 interactions with chain K Hydrophobic interactions: W:L.173, W:L.173, W:V.174, W:I.177, X:L.65, X:L.69, X:L.69, X:F.70 Hydrogen bonds: W:K.182, W:N.183, K:R.97, K:R.97, K:R.97 Salt bridges: W:K.186, K:R.97, K:R.97 9YF.63: 21 residues within 4Å: Chain K: I.179, P.180, V.181, I.182, W.185, M.186, A.189, P.319, F.320, H.322, I.324, V.328, A.331, V.332 Chain X: I.181, W.185, W.200, W.378, E.379 Ligands: 9XX.16, HUU.23 16 PLIP interactions: 10 interactions with chain K, 6 interactions with chain X Hydrophobic interactions: K:P.180, K:W.185, K:W.185, K:W.185, K:W.185, K:A.189, K:V.328, K:V.332, X:I.181, X:W.378, X:W.378, X:E.379 Salt bridges: K:H.322, K:H.322 Hydrogen bonds: X:W.200, X:W.378 9YF.64: 20 residues within 4Å: Chain K: W.185 Chain V: E.95, V.96, R.97 Chain W: L.65, F.68, L.69, F.70, W.73 Chain X: G.169, A.170, L.173, V.174, I.177, G.178, G.179, I.181, K.182, N.183, K.186 15 PLIP interactions: 7 interactions with chain X, 3 interactions with chain W, 5 interactions with chain V Hydrophobic interactions: X:L.173, X:L.173, X:V.174, X:I.177, W:L.69, W:F.70, W:F.70 Hydrogen bonds: X:K.182, X:N.183, V:R.97, V:R.97, V:R.97 Salt bridges: X:K.186, V:R.97, V:R.97

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)

HEM.21: 30 residues within 4Å: Chain K: S.36, F.37, G.40, E.41, A.43, L.44, F.113, I.117, H.120, L.121, R.123, I.124, A.129, F.130, R.134, N.137, W.138, G.141, S.142, L.144, L.145, A.148, I.216, I.220, H.223, L.224, V.227, H.232, T.233 Ligands: MQ9.25 23 PLIP interactions: 23 interactions with chain K, Hydrophobic interactions: K:F.113, K:I.117, K:I.117, K:L.121, K:L.121, K:I.124, K:I.124, K:W.138, K:L.144, K:L.145, K:V.227, K:V.227 Hydrogen bonds: K:G.40, K:T.233 Salt bridges: K:H.120, K:R.123, K:R.123, K:R.134, K:H.232, K:H.232 pi-Stacking: K:H.120 pi-Cation interactions: K:H.223 Metal complexes: K:H.223 HEM.22: 32 residues within 4Å: Chain K: F.47, L.50, L.51, G.54, V.55, L.57, T.58, F.61, A.89, I.92, R.103, H.106, H.107, A.110, F.113, A.148, E.151, G.152, G.155, Y.156, L.158, P.159, Y.205, H.208, I.209, P.213, I.216, N.279, D.299, Y.301 Chain V: L.210, L.211 19 PLIP interactions: 1 interactions with chain V, 18 interactions with chain K, Hydrophobic interactions: V:L.210, K:F.47, K:L.50, K:L.50, K:L.51, K:V.55, K:L.57, K:F.113, K:F.113, K:E.151, K:L.158, K:Y.205, K:P.213 Hydrogen bonds: K:N.279 Salt bridges: K:R.103, K:R.103, K:H.107 pi-Stacking: K:H.106 Metal complexes: K:H.106 HEM.50: 30 residues within 4Å: Chain V: S.36, F.37, G.40, E.41, A.43, L.44, F.113, I.117, H.120, L.121, R.123, I.124, A.129, F.130, R.134, N.137, W.138, G.141, S.142, L.144, L.145, A.148, I.216, I.220, H.223, L.224, V.227, H.232, T.233 Ligands: MQ9.54 27 PLIP interactions: 27 interactions with chain V, Hydrophobic interactions: V:A.43, V:L.44, V:F.113, V:I.117, V:I.117, V:I.117, V:I.124, V:I.124, V:A.129, V:N.137, V:W.138, V:L.144, V:L.145, V:I.220, V:L.224, V:V.227, V:V.227 Hydrogen bonds: V:G.40, V:R.123, V:T.233 Salt bridges: V:H.120, V:R.123, V:R.134, V:H.232, V:H.232 pi-Stacking: V:H.120 Metal complexes: V:H.120 HEM.51: 30 residues within 4Å: Chain K: L.210 Chain V: F.47, L.50, L.51, G.54, V.55, L.57, T.58, F.61, I.92, R.103, H.106, H.107, A.110, F.113, A.148, E.151, G.152, G.155, Y.156, L.158, P.159, Y.205, H.208, I.209, P.213, I.216, N.279, D.299, Y.301 21 PLIP interactions: 20 interactions with chain V, 1 interactions with chain K, Hydrophobic interactions: V:F.47, V:L.50, V:L.50, V:L.51, V:V.55, V:L.57, V:L.57, V:F.113, V:E.151, V:L.158, V:Y.205, V:I.209, V:I.209, V:P.213, K:L.210 Hydrogen bonds: V:N.279 Salt bridges: V:R.103, V:R.103, V:H.107 pi-Stacking: V:H.106 Metal complexes: V:H.106

2 x HUU: 6-chloranyl-2-ethyl-N-[[4-[4-[4-(trifluoromethyloxy)phenyl]piperidin-1-yl]phenyl]methyl]imidazo[1,2-a]pyridine-3-carboxamide(Non-covalent)

HUU.23: 28 residues within 4Å: Chain K: F.150, F.153, Y.156, L.163, S.164, T.166, G.167, A.170, A.171, L.172, I.175, T.176, I.179, M.186, S.296, Q.297, P.298, M.302, T.305, D.306, I.309, V.330, A.331, M.334 Chain X: L.310, C.328, H.329 Ligands: 9YF.63 10 PLIP interactions: 8 interactions with chain K, 2 interactions with chain X Hydrophobic interactions: K:A.170, K:A.171, K:I.175, K:I.175, K:D.306, K:I.309, X:L.310 Hydrogen bonds: K:Y.156, X:H.329 pi-Stacking: K:F.153 HUU.52: 29 residues within 4Å: Chain V: F.150, F.153, Y.156, L.163, S.164, T.166, G.167, A.170, A.171, L.172, I.175, T.176, I.179, M.186, L.190, S.296, Q.297, P.298, M.302, T.305, D.306, I.309, V.330, A.331, M.334 Chain W: L.310, C.328, H.329 Ligands: 9YF.60 9 PLIP interactions: 7 interactions with chain V, 2 interactions with chain W Hydrophobic interactions: V:F.150, V:F.153, V:A.171, V:I.175, V:I.175, V:T.305, V:I.309, W:L.310 Hydrogen bonds: W:H.329

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.59: 10 residues within 4Å: Chain W: C.307, H.309, L.310, C.312, C.326, C.328, H.329, S.331, P.345, A.346 4 PLIP interactions: 4 interactions with chain W, Metal complexes: W:C.307, W:H.309, W:C.326, W:H.329 FES.62: 10 residues within 4Å: Chain X: C.307, H.309, L.310, C.312, C.326, C.328, H.329, S.331, P.345, A.346 4 PLIP interactions: 4 interactions with chain X, Metal complexes: X:C.307, X:H.309, X:C.326, X:H.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yanofsky, D.J. et al., Structure of mycobacterial CIII 2 CIV 2 respiratory supercomplex bound to the tuberculosis drug candidate telacebec (Q203). Elife (2021)

Release Date

2021-08-04

Peptides

LpqE protein: AT
Cytochrome aa3 subunit 2: BL
Cytochrome c oxidase subunit 1: CM
Cytochrome aa3 subunit 3: DN
Cytochrome c oxidase polypeptide 4: EO
Cytochrome c oxidase subunit CtaJ: FP
Uncharacterized protein MSMEG_4692/MSMEI_4575: GQ
Conserved transmembrane protein: HR
Superoxide dismutase [Cu-Zn]: IS
Cytochrome bc1 complex cytochrome c subunit: JU
Cytochrome bc1 complex cytochrome b subunit: KV
Cytochrome bc1 complex Rieske iron-sulfur subunit: WX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
W

T
c

B
Q

L
K

C
R

M
L

D
S

N
X

E
T

O
Z

F
U

P
a

G
V

Q
b

H
P

R
J

I
G

S
D

J
O

U
I

K
E

V
F

W
Y

X
M

Membrane

We predict this structure to be a membrane protein.
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LpqE protein

Cytochrome aa3 subunit 2

Cytochrome c oxidase subunit 1

Cytochrome aa3 subunit 3

Cytochrome c oxidase polypeptide 4

Cytochrome c oxidase subunit CtaJ

Uncharacterized protein MSMEG_4692/MSMEI_4575

Conserved transmembrane protein

Superoxide dismutase [Cu-Zn]

Cytochrome bc1 complex cytochrome c subunit

Cytochrome bc1 complex cytochrome b subunit

Cytochrome bc1 complex Rieske iron-sulfur subunit

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