SMTL ID : 7sh9.1

Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI86

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x 9HA: benzyl [(2S,3R)-1-({(2S)-1-[2-acetyl-2-(3-amino-3-oxopropyl)hydrazinyl]-3-cyclohexyl-1-oxopropan-2-yl}amino)-3-tert-butoxy-1-oxobutan-2-yl]carbamate (non-preferred name)(Covalent)

9HA.1: 21 residues within 4Å: Chain A: H.41, Y.54, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, L.167, P.168, H.172, D.187, R.188, Q.189, T.190, A.191, Q.192 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:H.41, A:P.168, A:Q.189 Hydrogen bonds: A:F.140, A:N.142, A:G.143, A:S.144, A:S.144, A:C.145, A:H.164, A:E.166, A:E.166, A:Q.189 9HA.2: 21 residues within 4Å: Chain B: H.41, Y.54, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, L.167, P.168, H.172, D.187, R.188, Q.189, T.190, A.191, Q.192 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:H.41, B:P.168, B:Q.189 Hydrogen bonds: B:F.140, B:N.142, B:G.143, B:S.144, B:S.144, B:C.145, B:H.164, B:E.166, B:E.166, B:E.166, B:Q.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, K.S. et al., Structure of the SARS-CoV-2 main protease in complex with inhibitors. To Be Published

Release Date

2023-04-12

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase nsp5

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