SMTL ID : 8ph4.1

Co-Crystal structure of the SARS-CoV2 main protease Nsp5 with an Uracil-carrying X77-like inhibitor

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.69 Å
Oligo State
homo-dimer
Ligands
1 x MLI: MALONATE ION(Non-functional Binders)
4 x YQN: ~{N}-(4-~{tert}-butylphenyl)-~{N}-[(1~{S})-2-(cyclohexylamino)-2-oxidanylidene-1-pyridin-3-yl-ethyl]-2,6-bis(oxidanylidene)-5~{H}-pyrimidine-5-carboxamide(Non-covalent)
2 x NA: SODIUM ION(Non-functional Binders)
1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Altincekic, N. et al., Targeting the Main Protease (M pro , nsp5) by Growth of Fragment Scaffolds Exploiting Structure-Based Methodologies. Acs Chem.Biol. (2024)
Release Date
2024-01-31
Peptides
3C-like proteinase nsp5: AB
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B

3C-like proteinase nsp5

Toggle Identical (AB)

Related Entries With Identical Sequence

5r7y.1 | 5r7z.1 | 5r80.1 | 5r81.1 | 5r82.1 | 5r83.1 | 5r84.1 | 5r8t.1 | 5re4.1 | 5re5.1 | 5re6.1 | 5re7.1 | 5re8.1 | 5re9.1 | 5rea.1 | 5reb.1 | 5rec.1 | 5red.1 | 5ree.1 | 5ref.1 | 5reg.1 | 5reh.1 | 5rei.1 | 5rej.1 | 5rek.1 | 5rel.1 | 5rem.1 | 5ren.1 | 5reo.1 | 5rep.1  more...