SMTL ID : 8gxg.1

The crystal structure of SARS-CoV-2 main protease in complex with 14a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

homo-dimer

Ligands

2 x 06Q: N-[(2S)-3-(4-fluorophenyl)-1-oxidanylidene-1-[[(2S,3S)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepiperidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-1-benzofuran-2-carboxamide(Covalent)

06Q.1: 22 residues within 4Å: Chain A: T.25, L.27, H.41, C.44, T.45, M.49, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, H.172, V.186, D.187, R.188, Q.189, Q.192 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.25, A:M.165 Hydrogen bonds: A:F.140, A:G.143, A:S.144, A:C.145, A:H.164, A:E.166 pi-Stacking: A:H.41 06Q.2: 22 residues within 4Å: Chain B: T.25, L.27, H.41, C.44, T.45, M.49, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, H.172, V.186, D.187, R.188, Q.189, Q.192 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:T.25, B:M.165 Hydrogen bonds: B:F.140, B:G.143, B:S.144, B:C.145, B:H.164, B:E.166 pi-Stacking: B:H.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., The crystal structure of SARS-CoV-2 main protease in complex with 14a. To Be Published

Release Date

2023-09-27

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase nsp5

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