SMTL ID : 7sow.1

LaM domain of human LARP1 in complex with UUUUUU

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x U- U- U- U: RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')(Non-covalent)

U-U-U-U.1: 11 residues within 4Å: Chain A: Q.22, Y.25, Y.26, R.34, D.35, F.37, L.38, F.56, H.57, R.58 Ligands: EDO.5 Protein-ligand interaction information (PLIP) not available

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: H.9, K.16, S.67, L.68, A.71 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.9, A:K.16, A:S.67 EDO.3: 3 residues within 4Å: Chain A: D.65, I.66, S.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.65, A:I.66, A:S.67 EDO.4: 4 residues within 4Å: Chain A: S.28, V.29, D.30, R.88 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.29, A:D.30, A:R.88, A:R.88 EDO.5: 4 residues within 4Å: Chain A: R.21, Q.22, Y.25 Ligands: U-U-U-U.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kozlov, G. et al., Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1. Rna Biol. (2024)

Release Date

2022-11-09

Peptides

Isoform 2 of La-related protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 2 of La-related protein 1

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