- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x PQU: (5S)-3-anilino-5-methyl-5-(6-phenoxypyridin-3-yl)-1,3-oxazolidine-2,4-dione(Non-covalent)
PQU.3: 22 residues within 4Å:- Chain A: M.140, A.141, A.143, F.144, Y.147, V.148, M.154, G.158, A.159, V.161, I.162, L.165, F.166, I.292, V.293, P.294, E.295, Y.297, F.298, Y.302, M.336, F.337
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:F.144, A:Y.147, A:V.161, A:I.162, A:I.162, A:F.166, A:I.292, A:P.294, A:P.294, A:E.295, A:F.298, A:F.298, A:F.298, A:Y.302, A:F.337
- Hydrogen bonds: A:E.295
- pi-Stacking: A:F.298
PQU.9: 20 residues within 4Å:- Chain E: M.140, A.141, A.143, F.144, Y.147, V.148, S.155, G.158, V.161, I.162, F.166, I.292, V.293, P.294, E.295, Y.297, F.298, Y.302, M.336, F.337
16 PLIP interactions:16 interactions with chain E- Hydrophobic interactions: E:F.144, E:Y.147, E:V.161, E:I.162, E:I.162, E:F.166, E:I.292, E:P.294, E:P.294, E:E.295, E:F.298, E:F.298, E:F.298, E:Y.302
- Hydrogen bonds: E:E.295
- pi-Stacking: E:F.298
- 2 x LOP: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE(Non-covalent)
LOP.4: 19 residues within 4Å:- Chain A: N.42, M.44, I.106, Y.109, L.110, F.113, R.114, Y.117, Y.118, P.224, Y.273, L.274, W.296, R.358, F.367, W.368, A.371, F.374, V.375
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:I.106, A:I.106, A:Y.109, A:F.113, A:F.113, A:F.113, A:F.367, A:A.371, A:F.374
- Hydrogen bonds: A:R.358
- Salt bridges: A:R.358
LOP.10: 19 residues within 4Å:- Chain E: M.44, I.106, Y.109, L.110, F.113, R.114, Y.117, Y.118, Y.273, W.296, R.358, F.367, W.368, A.371, F.374, V.375
- Chain F: T.116, I.118, L.121
11 PLIP interactions:11 interactions with chain E- Hydrophobic interactions: E:I.106, E:Y.109, E:L.110, E:F.113, E:Y.117, E:W.368, E:A.371, E:F.374
- Hydrogen bonds: E:Y.117, E:Y.118
- Salt bridges: E:R.358
- 2 x HEC: HEME C(Covalent)
HEC.5: 26 residues within 4Å:- Chain B: V.31, V.35, C.36, A.38, C.39, H.40, L.94, N.96, A.97, P.98, L.100, M.103, R.107, Y.130, I.131, V.134, L.135, F.160, I.183, A.184, M.185, P.186, P.188, L.189, V.211, L.215
15 PLIP interactions:15 interactions with chain B,- Hydrophobic interactions: B:V.35, B:L.94, B:A.97, B:L.100, B:L.135, B:I.183, B:A.184, B:P.188, B:L.189, B:V.211
- Hydrogen bonds: B:Y.130, B:Y.130, B:A.184
- Salt bridges: B:R.107
- Metal complexes: B:H.40
HEC.11: 27 residues within 4Å:- Chain F: V.31, V.35, C.36, A.38, C.39, H.40, L.94, N.96, A.97, P.98, L.100, M.103, R.107, Y.130, I.131, V.134, L.135, F.160, N.162, I.183, A.184, M.185, P.186, P.188, L.189, V.211, L.215
10 PLIP interactions:10 interactions with chain F,- Hydrophobic interactions: F:P.98, F:L.135, F:I.183, F:P.188, F:V.211, F:L.215
- Hydrogen bonds: F:Y.130, F:A.184
- Salt bridges: F:R.107
- Metal complexes: F:H.40
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.6: 10 residues within 4Å:- Chain C: C.129, H.131, L.132, G.133, C.134, C.149, C.151, H.152, S.154, P.166
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:C.129, C:H.131, C:C.149, C:H.152
FES.12: 12 residues within 4Å:- Chain G: C.129, H.131, L.132, G.133, C.134, C.149, C.151, H.152, G.153, S.154, P.166, A.167
4 PLIP interactions:4 interactions with chain G,- Metal complexes: G:C.129, G:H.131, G:C.149, G:H.152
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xia, D. et al., Conformation Switch of Rieske ISP subunit is revealed by the Crystal Structure of Bacterial Cytochrome bc1 in Complex with Azoxystrobin. to be published
- Release Date
- 2023-02-08
- Peptides
- Cytochrome b: AE
Cytochrome c1: BF
Ubiquinol-cytochrome c reductase iron-sulfur subunit: CG
14 kDa peptide of ubiquinol-cytochrome c2 oxidoreductase complex: DH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AE
EB
BF
FC
CG
GD
DH
H - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x PQU: (5S)-3-anilino-5-methyl-5-(6-phenoxypyridin-3-yl)-1,3-oxazolidine-2,4-dione(Non-covalent)
- 2 x LOP: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE(Non-covalent)
- 2 x HEC: HEME C(Covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xia, D. et al., Conformation Switch of Rieske ISP subunit is revealed by the Crystal Structure of Bacterial Cytochrome bc1 in Complex with Azoxystrobin. to be published
- Release Date
- 2023-02-08
- Peptides
- Cytochrome b: AE
Cytochrome c1: BF
Ubiquinol-cytochrome c reductase iron-sulfur subunit: CG
14 kDa peptide of ubiquinol-cytochrome c2 oxidoreductase complex: DH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AE
EB
BF
FC
CG
GD
DH
H - Membrane
-
We predict this structure to be a membrane protein.