SMTL ID : 7tp3.1

Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody K288.2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x CAC: CACODYLATE ION(Non-covalent)

CAC.1: 2 residues within 4Å: Chain A: R.28, N.36 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.28, A:N.36 CAC.2: 4 residues within 4Å: Chain C: D.9, G.101, T.102, K.103 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.103 CAC.3: 6 residues within 4Å: Chain C: Q.37, R.45, M.58, P.59, F.62, D.81 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, W.T. et al., Broadly neutralizing antibodies to SARS-related viruses can be readily induced in rhesus macaques. Sci Transl Med (2022)

Release Date

2022-02-23

Peptides

Spike protein S1: A
K288.2 heavy chain: B
K288.2 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Z

B
H

C
L

Spike protein S1

K288.2 heavy chain

K288.2 light chain

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