SMTL ID : 7uuu.1

First bromodomain of BRDT liganded with compound 2c

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

1 x OFR: prop-2-en-1-yl (5S)-1-ethyl-7-methyl-5-(4-methylphenyl)-2,4-dioxo-1,2,3,4,5,8-hexahydropyrido[2,3-d]pyrimidine-6-carboxylate(Non-covalent)

OFR.1: 16 residues within 4Å: Chain A: W.26, P.27, F.28, V.32, K.36, L.37, Q.38, L.39, Y.42, C.81, Y.84, N.85, D.90, I.91, M.94 Ligands: EDO.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.26, A:W.26, A:V.32, A:L.39, A:D.90, A:I.91 Hydrogen bonds: A:N.85, A:N.85 Water bridges: A:P.27

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: K.100, Q.104 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.104 EDO.3: 7 residues within 4Å: Chain A: A.34, L.39, P.40, D.41, Y.42, Y.43, T.44 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.42, A:Y.43, A:T.44, A:T.44 Water bridges: A:L.39, A:D.41 EDO.4: 4 residues within 4Å: Chain A: L.37, Q.38, L.39 Ligands: OFR.1 No protein-ligand interaction detected (PLIP) EDO.5: 1 residues within 4Å: Chain A: W.26 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, J. et al., 1,4-Dihydropyridinebutyrolactone-derived ring-opened ester and amide analogs targeting BET bromodomains. Arch Pharm (2022)

Release Date

2022-08-24

Peptides

Bromodomain testis-specific protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain testis-specific protein

Related Entries With Identical Sequence